Literature DB >> 29275226

Reverse-engineering organogenesis through feedback loops between model systems.

Cody Narciso1, Jeremiah Zartman2.   

Abstract

Biological complexity and ethical limitations necessitate models of human development. Traditionally, genetic model systems have provided inexpensive routes to define mechanisms governing organ development. Recent progress has led to 3D human organoid models of development and disease. However, robust methods to control the size and morphology of organoids for high throughput studies need to be developed. Additionally, insights from multiple developmental contexts are required to reveal conserved genes and processes regulating organ growth and development. Positive feedback between quantitative studies using mammalian organoids and insect micro-organs enable identification of underlying principles for organ size and shape control. Advances in the field of multicellular systems engineering are enabling unprecedented high-content studies in developmental biology and disease modeling. These will lead to fundamental advances in regenerative medicine and tissue-engineered soft robotics.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29275226      PMCID: PMC6013317          DOI: 10.1016/j.copbio.2017.12.009

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  64 in total

Review 1.  How computational models can help unlock biological systems.

Authors:  G Wayne Brodland
Journal:  Semin Cell Dev Biol       Date:  2015-07-09       Impact factor: 7.727

2.  A process engineering approach to increase organoid yield.

Authors:  Natasha Arora; Jasmin Imran Alsous; Jacob W Guggenheim; Michael Mak; Jorge Munera; James M Wells; Roger D Kamm; H Harry Asada; Stanislav Y Shvartsman; Linda G Griffith
Journal:  Development       Date:  2017-02-07       Impact factor: 6.868

3.  Fruit flies in biomedical research.

Authors:  Michael F Wangler; Shinya Yamamoto; Hugo J Bellen
Journal:  Genetics       Date:  2015-01-26       Impact factor: 4.562

Review 4.  Drosophila cancer models.

Authors:  Vivek A Rudrapatna; Ross L Cagan; Tirtha K Das
Journal:  Dev Dyn       Date:  2011-10-28       Impact factor: 3.780

5.  The Spatiotemporal Limits of Developmental Erk Signaling.

Authors:  Heath E Johnson; Yogesh Goyal; Nicole L Pannucci; Trudi Schüpbach; Stanislav Y Shvartsman; Jared E Toettcher
Journal:  Dev Cell       Date:  2017-01-23       Impact factor: 12.270

Review 6.  Organ Size Control: Lessons from Drosophila.

Authors:  Iswar K Hariharan
Journal:  Dev Cell       Date:  2015-08-10       Impact factor: 12.270

Review 7.  Modeling Development and Disease with Organoids.

Authors:  Hans Clevers
Journal:  Cell       Date:  2016-06-16       Impact factor: 41.582

8.  Non-invasive screening for Alzheimer's disease by sensing salivary sugar using Drosophila cells expressing gustatory receptor (Gr5a) immobilized on an extended gate ion-sensitive field-effect transistor (EG-ISFET) biosensor.

Authors:  Hui-Chong Lau; In-Kyu Lee; Pan-Woo Ko; Ho-Won Lee; Jeung-Soo Huh; Won-Ju Cho; Jeong-Ok Lim
Journal:  PLoS One       Date:  2015-02-25       Impact factor: 3.240

9.  Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia.

Authors:  Ali Nematbakhsh; Wenzhao Sun; Pavel A Brodskiy; Aboutaleb Amiri; Cody Narciso; Zhiliang Xu; Jeremiah J Zartman; Mark Alber
Journal:  PLoS Comput Biol       Date:  2017-05-22       Impact factor: 4.475

10.  Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.

Authors:  Jasper Akerboom; Nicole Carreras Calderón; Lin Tian; Sebastian Wabnig; Matthias Prigge; Johan Tolö; Andrew Gordus; Michael B Orger; Kristen E Severi; John J Macklin; Ronak Patel; Stefan R Pulver; Trevor J Wardill; Elisabeth Fischer; Christina Schüler; Tsai-Wen Chen; Karen S Sarkisyan; Jonathan S Marvin; Cornelia I Bargmann; Douglas S Kim; Sebastian Kügler; Leon Lagnado; Peter Hegemann; Alexander Gottschalk; Eric R Schreiter; Loren L Looger
Journal:  Front Mol Neurosci       Date:  2013-03-04       Impact factor: 5.639

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  4 in total

1.  Microfluidics on the fly: Inexpensive rapid fabrication of thermally laminated microfluidic devices for live imaging and multimodal perturbations of multicellular systems.

Authors:  Megan Levis; Nilay Kumar; Emily Apakian; Cesar Moreno; Ulises Hernandez; Ana Olivares; Fernando Ontiveros; Jeremiah J Zartman
Journal:  Biomicrofluidics       Date:  2019-04-26       Impact factor: 2.800

2.  Decoding Calcium Signaling Dynamics during Drosophila Wing Disc Development.

Authors:  Pavel A Brodskiy; Qinfeng Wu; Dharsan K Soundarrajan; Francisco J Huizar; Jianxu Chen; Peixian Liang; Cody Narciso; Megan K Levis; Ninfamaria Arredondo-Walsh; Danny Z Chen; Jeremiah J Zartman
Journal:  Biophys J       Date:  2019-01-11       Impact factor: 4.033

Review 3.  Interplay between morphogen-directed positional information systems and physiological signaling.

Authors:  Francisco Huizar; Dharsan Soundarrajan; Ramezan Paravitorghabeh; Jeremiah Zartman
Journal:  Dev Dyn       Date:  2019-12-20       Impact factor: 3.780

4.  MAPPER: An Open-Source, High-Dimensional Image Analysis Pipeline Unmasks Differential Regulation of Drosophila Wing Features.

Authors:  Nilay Kumar; Francisco J Huizar; Keity J Farfán-Pira; Pavel A Brodskiy; Dharsan K Soundarrajan; Marcos Nahmad; Jeremiah J Zartman
Journal:  Front Genet       Date:  2022-04-11       Impact factor: 4.772

  4 in total

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