| Literature DB >> 29272442 |
Hailong Wang1, Zhen Li1, Ruonan Jia1, Jia Yin1, Aiying Li1, Liqiu Xia2, Yulong Yin1,2,3, Rolf Müller1,4, Jun Fu1, A Francis Stewart5, Youming Zhang1.
Abstract
Entities:
Year: 2018 PMID: 29272442 PMCID: PMC5861451 DOI: 10.1093/nar/gkx1296
Source DB: PubMed Journal: Nucleic Acids Res ISSN: 0305-1048 Impact factor: 16.971
Large genomic segments directly cloned from bacteria, mammalian cells and human blood with ExoCET
| Target | Source | Genome (Mb) | Digestion enzymes | Fragment (kb) | Vector | c.f.u. (/ml) | Correct/checked |
|---|---|---|---|---|---|---|---|
|
|
| 5.69 | XbaI | 38 | pBAC2015 | 1815±132 | 12/12 |
|
|
| 5.69 | XbaI+XmaI | 53 | p15A | 787±194 | 10/12 |
| salinomycin cluster |
| 8.38 | EcoRV | 106 | pBeloBAC11 | 425±91 | 2/24 |
| salinomycin cluster |
| 8.38 | Cas9 | 106 | pBeloBAC11 | 260±14 | 1/24 |
|
| Mouse melanoma B16 cell | 2800.06 |
| 45 | p15A | 76±16 | 8/25 |
|
| Mouse melanoma B16 cell | 2800.06 |
| 53 | p15A | 52±6 | 1/12 |
|
| Mouse melanoma B16 cell | 2800.06 |
| 8 | p15A | 205±17 | 10/12 |
|
| Human blood | 3221.49 | BstZ17I | 41 | p15A | 275±76 | 5/48 |
|
| Human blood | 3221.49 | NdeI | 45 | p15A | 115±35 | 2/48 |
|
| Mouse melanoma B16 cell | 2800.06 |
| 8.7 | p15A | 273±18 | 9/12 |
|
| HEK 293T cell |
| SpeI | 9.1 | p15A | 40±10 | 17/24 |
|
| Human blood | 3221.49 | SpeI | 9.1 | p15A | 45±2 | 5/24 |
|
| Mouse R1 ES cells | 2800.06 | EcoRV+Pac | 9.6 | p15A | 34±1 | 9/36 |
|
| Mouse R1 ES cells | 2800.06 | Nde | 13 | p15A | 49±12 | 17/54 |
|
| Mouse GM8 ES cells | 2800.06 | BstZ17l | 16.8 | p15A | 212±27 | 5/45 |
|
| Mouse R1 ES cells | 2800.06 | SspI+SpeI | 17.1 | p15A | 127±38 | 7+3/24 |
|
| 323±65 | 2+2/36 | |||||
|
| 142±27 | 6+9/72 | |||||
|
| 483±91 | 3+5/36 |
All experiments were done in triplicate; c.f.u. includes standard deviation and fidelity was monitored by restriction analysis of the indicated number of colonies. For the Mll4 experiments, fidelity shows the targeted allele + wt allele/colonies examined. DNA analyses are shown in Supplementary Figure S6.