Literature DB >> 29272442

ExoCET: exonuclease in vitro assembly combined with RecET recombination for highly efficient direct DNA cloning from complex genomes.

Hailong Wang1, Zhen Li1, Ruonan Jia1, Jia Yin1, Aiying Li1, Liqiu Xia2, Yulong Yin1,2,3, Rolf Müller1,4, Jun Fu1, A Francis Stewart5, Youming Zhang1.   

Abstract

Entities:  

Year:  2018        PMID: 29272442      PMCID: PMC5861451          DOI: 10.1093/nar/gkx1296

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


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Nucleic Acids Research (2017) gkx1249, https://doi.org/10.1093/nar/gkx1249 The authors wish to make the corrections highlighted in bold to Table 1 of their article. The corrections have also been made in the published article and do not affect the results and overall conclusions of the work.
Table 1.

Large genomic segments directly cloned from bacteria, mammalian cells and human blood with ExoCET

TargetSourceGenome (Mb)Digestion enzymesFragment (kb)Vectorc.f.u. (/ml)Correct/checked
plu3535-3532 P. luminescens DSM151395.69XbaI38pBAC20151815±13212/12
plu2670 P. luminescens DSM151395.69XbaI+XmaI53p15A787±19410/12
salinomycin cluster S. albus DSM413988.38EcoRV106pBeloBAC11425±912/24
salinomycin cluster S. albus DSM413988.38Cas9106pBeloBAC11260±141/24
Wnt4 Mouse melanoma B16 cell2800.06 SwaI 45p15A76±168/25
Lmbr1l-Tuba1a Mouse melanoma B16 cell2800.06 SwaI 53p15A52±61/12
Prkar1a Mouse melanoma B16 cell2800.06 HpaI 8p15A205±1710/12
IGFLR1-ARHGAP33 Human blood3221.49BstZ17I41p15A275±765/48
ZBTB32-LIN37 Human blood3221.49NdeI45p15A115±352/48
Dpy30 Mouse melanoma B16 cell2800.06 BamHI+KpnI 8.7p15A273±189/12
DPY30 HEK 293T cell 3221.49 SpeI9.1p15A40±1017/24
DPY30 Human blood3221.49SpeI9.1p15A45±25/24
Oct4-Venus Mouse R1 ES cells2800.06EcoRV+PacI9.6p15A34±19/36
Nanog-Cherry Mouse R1 ES cells2800.06NdeI13p15A49±1217/54
Gata2-Venus Mouse GM8 ES cells2800.06BstZ17l16.8p15A212±275/45
Mll4 (1)Mouse R1 ES cells2800.06SspI+SpeI17.1p15A127±387+3/24
Mll4 (2)323±652+2/36
Mll4 (3)142±276+9/72
Mll4 (4)483±913+5/36

All experiments were done in triplicate; c.f.u. includes standard deviation and fidelity was monitored by restriction analysis of the indicated number of colonies. For the Mll4 experiments, fidelity shows the targeted allele + wt allele/colonies examined. DNA analyses are shown in Supplementary Figure S6.

All experiments were done in triplicate; c.f.u. includes standard deviation and fidelity was monitored by restriction analysis of the indicated number of colonies. For the Mll4 experiments, fidelity shows the targeted allele + wt allele/colonies examined. DNA analyses are shown in Supplementary Figure S6.
  7 in total

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4.  T5 exonuclease-dependent assembly offers a low-cost method for efficient cloning and site-directed mutagenesis.

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Review 5.  Streptomyces as Microbial Chassis for Heterologous Protein Expression.

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7.  Development and application of an efficient recombineering system for Burkholderia glumae and Burkholderia plantarii.

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  7 in total

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