| Literature DB >> 29266860 |
Jie-Ying Zhou1,2,3, Ying Peng2,4, Xiao-You Peng1, Han-Chun Gao2, Ya-Ping Sun5, Le-Yun Xie4, Li-Li Zhong4, Zhao-Jun Duan2, Zhi-Ping Xie2, You-de Cao3.
Abstract
BACKGROUND: Lower respiratory tract illness is a major cause of morbidity and mortality in children worldwide, however, information about the epidemiological and clinical characteristics of LRTIs caused by HMPV and HBoV in China is limited.Entities:
Keywords: epidemiology; human bocavirus; human metapneumovirus
Mesh:
Year: 2018 PMID: 29266860 PMCID: PMC5820417 DOI: 10.1111/irv.12535
Source DB: PubMed Journal: Influenza Other Respir Viruses ISSN: 1750-2640 Impact factor: 4.380
Primers and probes used for the real‐time polymerase chain reaction
| Assay | Target gene | Primer/probe sequence (5′ to 3′) | Source or reference |
|---|---|---|---|
| HRV | 5′ UTR | HRV1A,AGCCTGCGTGGCTGCCTG |
|
| HRV1A2, CCTGCGTGGCGGCCARC | |||
| HRV1B, CCCAAAGTAGTYGGTCCCRTCC | |||
| HRVPb, TCCTCCGGCYCCTGAATG | |||
| RSV | M | RSVF,GGCAAATATGGAAACATACGTGAA |
|
| RSVR,TCTTTTTCTAGGACATTGTAYTGAACAG | |||
| RSVPb,CTGTGTATGTGGAGCCTTCGTGAAGCT | |||
| FLUA | MP | FLUAF: GAC CRA TCC TGT CAC CTC TGA C | Internal, unpublished |
| FLUAR: AGG GCA TTY TGG ACA AAK CGT CTA | |||
| FLUAPb: TGC AGT CCT CGC TCA CTG GGC ACG | |||
| FLUB | Nucleoprotein | FLUBF: CCCACCRAGCAACAAAGG | Internal, unpublished |
| FLUBR: CCTTCCGACATCAGCTTCACT | |||
| FLUBPb: CCCGGAACCCATCCCCGGA | |||
| HMPV | F | HMPVF: CAAGTGTGACATTGCTGAYCTRAA |
|
| HMPVR: ACTGCCGCACAACATTTAGRAA | |||
| HMPVPb: TGGCYGTYAGCTTCAGTCAATTCAACAGA | |||
| HCOV‐NL63 | Nucleoprotein | HCOV‐NL63F: GACCAAAGCACTGAATAACATTTTCC |
|
| HCOV‐NL63R: ACCTAATAAGCCTCTTTCTCAACCC | |||
| HCOV‐NL63Pb:AACACGCT”T”CCAACGAGGTTTCTTCAACTGAG | |||
| HCOV‐HKU1 | Nucleocapsid gene | HCOV‐HKU1F: AGTTCCCATTGCTTTCGGAGTA |
|
| HCOV‐HKU1R: CCGGCTGTGTCTATACCAATATCC | |||
| HCOV‐HKU1Pb: CCCCTTCTGAAGCAA | |||
| HPIV1 | HN | PIV1F: AGTTGTCAATGTCTTAATTCGTATCAAT |
|
| PIV1R: TCGGCACCTAAGTAATTTTGAGTT | |||
| PIV1Pb:ATAGGCCAAAGA”T”TGTTGTCGAGACTATTCCAA | |||
| HPIV2 | HN | PIV2F: GCATTTCCAATCTACAGGACTATGA |
|
| PIV2R: ACCTCCTGGTATAGCAGTGACTGAAC | |||
| PIV2Pb:CCATTTACC”T”AAGTGATGGAATCAATCGCAAA | |||
| HPIV3 | HN | PIV3F: TGGYTCAATCTCAACAACAAGATTTAAG |
|
| PIV3R: TACCCGAGAAATATTATTTTGCC | |||
| PIV3Pb: CCCRTCTG”T”TGGACCAGGGATATACTACAAA | |||
| ADV | HEXON | AdvF: GCCCCAGTGGTCTTACATGCACATC |
|
| AdvR: GCCACGGTGGGGTTTCTAAACTT | |||
| AdvPb: TGCACCAGACCCGGGCTCAGGTACTCCGA | |||
| HBOV | NS1 | HBOV 1F: CCTATATAAGCTGCTGCACTTCCTG |
|
| HBOV 1R: AAGCCATAGTAGACTCACCACAAG | |||
| HBOV 234F: GCACTTCCGCATYTCGTCAG | |||
| HBOV 3R: GTGGATTGAAAGCCATAATTTGA | |||
| HBOV 24R: AGCAGAAAAGGCCATAGTGTCA | |||
| HBOV Pb: CCAGAGATGTTCACTCGCCG |
ADV, human adenovirus; HBOV, human bocavirus 1; HPIV, human parainfluenza virus; HMPV, human metapneumovirus; HCoV, human coronavirus; HRV, human rhinovirus; FLVA, influenza virus A; FLVB, influenza virus B; RSV, respiratory syncytial virus; HN, hemagglutinin‐neuraminidase; UTR, untranslated region.
Figure 1Season distribution of HBOV and HPMV detection rate during a 2‐year study
Clinical features of HBoV‐ and HMPV‐positive patients
| Clinical Data | HBoV | HMPV | ||||
|---|---|---|---|---|---|---|
| Positive | Negative |
| Positive | Negative |
| |
| Cough | 246 (93.5%) | 754 (90.9%) | .205 | 188 (94.5%) | 826 (92.5%) | .365 |
| Fever | 191 (72.6%) | 588 (70.9%) | .639 | 161 (80.9%) | 653 (73.1%) | .002 |
| Tachypneaa | 30 (11.4%) | 99 (11.9%) | .913 | 21 (10.6%) | 108 (12.1%) | .627 |
| Cyanosis | 11 (4.1%) | 39 (4.7%) | .502 | 9 (4.5%) | 41 (4.6%) | 1.000 |
| O2 therapy | 38 (15.2%) | 137 (16.0%) | 1.000 | 33 (16.6%) | 142 (16.0%) | .442 |
| WBC (×109 cells/L) | 10.82 ± 5.75 | 10.99 ± 6.10 | .696 | 10.69 ± 6.04 | 10.91 ± 5.44 | .610 |
| mean ± SD | n = 263 | n = 829 | n = 199 | n = 893 | ||
| Hospitalization (mean ± SD) | 7.93 ± 3.43 | 8.71 ± 5.16 | .021 | 8.27 ± 3.58 | 8.58 ± 5.04 | .409 |
Calculated by chi‐squared test or Fisher's exact test.
Calculated by independent samples t test.
Correlations between clinical characteristics and viral load
| Clinical Data | HBoV | HMPV | ||||
|---|---|---|---|---|---|---|
| n | Mean Viral Load |
| n | Mean Viral Load |
| |
| Age | ||||||
| <1 y | 168 | 3.40 ± 1.92 | .006 | 99 | 3.46 ± 1.97 | .299 |
| ≥1 y | 95 | 2.77 ± 1.49 | 100 | 3.75 ± 1.81 | ||
| Gender | ||||||
| Male | 184 | 3.25 ± 1.86 | .291 | 125 | 3.74 ± 1.95 | .174 |
| Female | 79 | 2.99 ± 1.64 | 74 | 3.36 ± 1.78 | ||
| Respiratory rate | ||||||
| Normal | 30 | 3.66 ± 2.24 | .122 | 21 | 3.44 ± 1.56 | .521 |
| High | 233 | 3.11 ± 1.73 | 178 | 3.65 ± 1.98 | ||
| Temperature | ||||||
| Normal | 72 | 2.85 ± 1.28 | .077 | 36 | 3.21 ± 1.63 | .161 |
| Fever | 191 | 3.29 ± 1.94 | 163 | 3.70 ± 1.94 | ||
| Cyanosis | ||||||
| No | 252 | 3.51 ± 2.35 | .519 | 190 | 3.64 ± 1.91 | .148 |
| Yes | 11 | 3.15 ± 1.77 | 9 | 2.71 ± 1.31 | ||
| Hospitalization | ||||||
| <7 d | 93 | 3.00 ± 1.54 | .269 | 27 | 3.62 ± 2.01 | .916 |
| ≥7 d | 170 | 3.26 ± 1.92 | 78 | 3.59 ± 1.85 | ||
| WBC | ||||||
| ≤10 (×109 cells/L) | 143 | 3.27 ± 1.80 | .325 | 107 | 3.77 ± 2.11 | .180 |
| >10 (×109 cells/L) | 120 | 3.05 ± 1.80 | 92 | 3.41 ± 1.60 | ||
Calculated by independent samples t test.
Figure 2Viral loads of NPAs from patients with or without respiratory coinfections
Clinical characteristics of patients infected with HBoV only and those coinfected with HBoV and other respiratory viruses
| Clinical Data | Single HBoV Infection (n = 43) | HBoV Coinfection (n = 220) |
|
|---|---|---|---|
| Males | 31 (72.1%) | 153 (69.6%) | .856 |
| Months ± SD | 26.05 ± 31.22 | 15.89 ± 18.94 | .005 |
| Fever | 29 (67.4%) | 162 (73.6%) | .717 |
| Tachypnea | 4 (9.3%) | 26 (11.8%) | .796 |
| Cyanosis | 2 (4.7%) | 9 (4.1%) | 1.000 |
| O2 therapy | 6 (14.0%) | 32 (14.5%) | .806 |
| Hospitalization | 7.67 ± 2.82 | 7.96 ± 3.54 | .615 |
| WBC | 11.64 ± 6.91 | 10.64 ± 5.5 | .301 |
| Diagnosis | |||
| Bronchitis | 3 (7.0%) | 7 (3.2%) | .213 |
| Pneumonia | 40 (93.0%) | 213 (96.8%) | .213 |
Calculated by chi‐squared test or Fisher's exact test.
Calculated by independent samples t test.
Clinical characteristics of patients infected with HMPV only and those coinfected with HMPV and other respiratory viruses
| Clinical data | Single HMPV (n = 40) | HMPV coinfections (n = 159) |
|
|---|---|---|---|
| Males | 28 (70.0%) | 97 (61.00%) | .361 |
| Months ± S D | 18.86 ± 24.06 | 19.00 ± 19.91 | .197 |
| Fever | 33 (82.50%) | 128 (80.50%) | 1.000 |
| Tachypnea | 5 (12.5%) | 16 (10.1%) | .773 |
| Cyanosis | 3 (7.5%) | 6 (3.2%) | .388 |
| O2 therapy | 5 (12.5%) | 28 (17.6%) | .634 |
| Hospitalization | 8.15 ± 2.43 | 8.32 ± 3.81 | .786 |
| WBC | 10.94 ± 5.42 | 10.65 ± 6.18 | .787 |
| Diagnosis | |||
| Bronchitis | 1 (2.5%) | 2 (5.0%) | .492 |
| Pneumonia | 39 (97.5%) | 157 (98.7%) | .492 |
Calculated by chi‐squared test or Fisher's exact test.
Calculated by independent samples t test.
Figure 3Viral loads of NPAs from patients with mild‐to‐moderate and severe pneumonia