Literature DB >> 29266648

Folding DNA into a Lipid-Conjugated Nanobarrel for Controlled Reconstitution of Membrane Proteins.

Yuanchen Dong1,2, Shuobing Chen2,3, Shijian Zhang1, Joseph Sodroski1, Zhongqiang Yang4, Dongsheng Liu4, Youdong Mao1,2,3.   

Abstract

Building upon DNA origami technology, we introduce a method to reconstitute a single membrane protein into a self-assembled DNA nanobarrel that scaffolds a nanodisc-like lipid environment. Compared with the membrane-scaffolding-protein nanodisc technique, our approach gives rise to defined stoichiometry, controlled sizes, as well as enhanced stability and homogeneity in membrane protein reconstitution. We further demonstrate potential applications of the DNA nanobarrels in the structural analysis of membrane proteins.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA nanotechnology; DNA origami; cryo-EM; membrane protein reconstitution; single-particle analysis

Mesh:

Substances:

Year:  2018        PMID: 29266648      PMCID: PMC5881377          DOI: 10.1002/anie.201710147

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  18 in total

1.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

Review 2.  Nanomaterials. Programmable materials and the nature of the DNA bond.

Authors:  Matthew R Jones; Nadrian C Seeman; Chad A Mirkin
Journal:  Science       Date:  2015-02-20       Impact factor: 47.728

3.  NMR analyses of the interaction between CCR5 and its ligand using functional reconstitution of CCR5 in lipid bilayers.

Authors:  Chie Yoshiura; Yutaka Kofuku; Takumi Ueda; Yoko Mase; Mariko Yokogawa; Masanori Osawa; Yuya Terashima; Kouji Matsushima; Ichio Shimada
Journal:  J Am Chem Soc       Date:  2010-05-19       Impact factor: 15.419

4.  A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron.

Authors:  William M Shih; Joel D Quispe; Gerald F Joyce
Journal:  Nature       Date:  2004-02-12       Impact factor: 49.962

5.  Multilayer DNA origami packed on a square lattice.

Authors:  Yonggang Ke; Shawn M Douglas; Minghui Liu; Jaswinder Sharma; Anchi Cheng; Albert Leung; Yan Liu; William M Shih; Hao Yan
Journal:  J Am Chem Soc       Date:  2009-11-04       Impact factor: 15.419

6.  Cryo-EM structure of the ribosome-SecYE complex in the membrane environment.

Authors:  Jens Frauenfeld; James Gumbart; Eli O van der Sluis; Soledad Funes; Marco Gartmann; Birgitta Beatrix; Thorsten Mielke; Otto Berninghausen; Thomas Becker; Klaus Schulten; Roland Beckmann
Journal:  Nat Struct Mol Biol       Date:  2011-04-17       Impact factor: 15.369

7.  Quantifying the local resolution of cryo-EM density maps.

Authors:  Alp Kucukelbir; Fred J Sigworth; Hemant D Tagare
Journal:  Nat Methods       Date:  2013-11-10       Impact factor: 28.547

8.  Massively parallel unsupervised single-particle cryo-EM data clustering via statistical manifold learning.

Authors:  Jiayi Wu; Yong-Bei Ma; Charles Congdon; Bevin Brett; Shuobing Chen; Yaofang Xu; Qi Ouyang; Youdong Mao
Journal:  PLoS One       Date:  2017-08-07       Impact factor: 3.240

9.  Self-assembly of DNA into nanoscale three-dimensional shapes.

Authors:  Shawn M Douglas; Hendrik Dietz; Tim Liedl; Björn Högberg; Franziska Graf; William M Shih
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

10.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

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  4 in total

1.  Programmable Nanodisc Patterning by DNA Origami.

Authors:  Zhao Zhang; Edwin R Chapman
Journal:  Nano Lett       Date:  2020-07-15       Impact factor: 11.189

2.  DNA Origami Post-Processing by CRISPR-Cas12a.

Authors:  Qiancheng Xiong; Chun Xie; Zhao Zhang; Longfei Liu; John T Powell; Qi Shen; Chenxiang Lin
Journal:  Angew Chem Int Ed Engl       Date:  2020-01-28       Impact factor: 15.336

3.  Revealing the structures of megadalton-scale DNA complexes with nucleotide resolution.

Authors:  Massimo Kube; Fabian Kohler; Elija Feigl; Baki Nagel-Yüksel; Elena M Willner; Jonas J Funke; Thomas Gerling; Pierre Stömmer; Maximilian N Honemann; Thomas G Martin; Sjors H W Scheres; Hendrik Dietz
Journal:  Nat Commun       Date:  2020-12-04       Impact factor: 14.919

Review 4.  Pharmaceutical applications of framework nucleic acids.

Authors:  Liang Chen; Jie Zhang; Zhun Lin; Ziyan Zhang; Miao Mao; Jiacheng Wu; Qian Li; Yuanqing Zhang; Chunhai Fan
Journal:  Acta Pharm Sin B       Date:  2021-05-26       Impact factor: 11.413

  4 in total

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