Literature DB >> 29266543

Relationship between genetic variation at PPP1R3B and levels of liver glycogen and triglyceride.

Stefan Stender1,2, Eriks Smagris1, Bo K Lauridsen3, Klaus F Kofoed4, Børge G Nordestgaard5,6, Anne Tybjaerg-Hansen3,5,6, Len A Pennacchio7, Diane E Dickel7, Jonathan C Cohen2, Helen H Hobbs1,2,8.   

Abstract

Genetic variation at rs4240624 on chromosome 8 is associated with an attenuated signal on hepatic computerized tomography, which has been attributed to changes in hepatic fat. The closest coding gene to rs4240624, PPP1R3B, encodes a protein that promotes hepatic glycogen synthesis. Here, we performed studies to determine whether the x-ray attenuation associated with rs4240624 is due to differences in hepatic glycogen or hepatic triglyceride content (HTGC). A sequence variant in complete linkage disequilibrium with rs4240624, rs4841132, was genotyped in the Dallas Heart Study (DHS), the Dallas Liver Study, and the Copenhagen Cohort (n = 112,428) of whom 1,539 had nonviral liver disease. The minor A-allele of rs4841132 was associated with increased hepatic x-ray attenuation (n = 1,572; P = 4 × 10-5 ), but not with HTGC (n = 2,674; P = 0.58). Rs4841132-A was associated with modest, but significant, elevations in serum alanine aminotransferase (ALT) in the Copenhagen Cohort (P = 3 × 10-4 ) and the DHS (P = 0.004), and with odds ratios for liver disease of 1.13 (95% CI, 0.97-1.31) and 1.23 (1.01-1.51), respectively. Mice lacking protein phosphatase 1 regulatory subunit 3B (PPP1R3B) were deficient in hepatic glycogen, whereas HTGC was unchanged. Hepatic overexpression of PPP1R3B caused accumulation of hepatic glycogen and elevated plasma levels of ALT, but did not change HTGC.
CONCLUSION: These observations are consistent with the notion that the minor allele of rs4841132 promotes a mild form of hepatic glycogenosis that is associated with hepatic injury. (Hepatology 2018;67:2182-2195).
© 2017 by the American Association for the Study of Liver Diseases.

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Year:  2018        PMID: 29266543      PMCID: PMC5991995          DOI: 10.1002/hep.29751

Source DB:  PubMed          Journal:  Hepatology        ISSN: 0270-9139            Impact factor:   17.425


  40 in total

1.  Heritability and genetic loci of fatty liver in familial combined hyperlipidemia.

Authors:  Martijn C G J Brouwers; Rita M Cantor; Naoko Kono; Jeong Lim Yoon; Carla J H van der Kallen; Monique A L Bilderbeek-Beckers; Marleen M J van Greevenbroek; Aldons J Lusis; Tjerk W A de Bruin
Journal:  J Lipid Res       Date:  2006-09-13       Impact factor: 5.922

2.  Hepatic protein phosphatase 1 regulatory subunit 3B (Ppp1r3b) promotes hepatic glycogen synthesis and thereby regulates fasting energy homeostasis.

Authors:  Minal B Mehta; Swapnil V Shewale; Raymond N Sequeira; John S Millar; Nicholas J Hand; Daniel J Rader
Journal:  J Biol Chem       Date:  2017-05-04       Impact factor: 5.157

3.  Glycogen content in rat liver. Importance for CT and MR imaging.

Authors:  P Leander; S Månsson; G Pettersson
Journal:  Acta Radiol       Date:  2000-01       Impact factor: 1.990

4.  Distinctive regulatory and metabolic properties of glycogen-targeting subunits of protein phosphatase-1 (PTG, GL, GM/RGl) expressed in hepatocytes.

Authors:  R Gasa; P B Jensen; H K Berman; M J Brady; A A DePaoli-Roach; C B Newgard
Journal:  J Biol Chem       Date:  2000-08-25       Impact factor: 5.157

5.  Association between PNPLA3 (rs738409), LYPLAL1 (rs12137855), PPP1R3B (rs4240624), GCKR (rs780094), and elevated transaminase levels in overweight/obese Mexican adults.

Authors:  Yvonne N Flores; Rafael Velázquez-Cruz; Paula Ramírez; Manuel Bañuelos; Zuo-Feng Zhang; Hal F Yee; Shen-Chih Chang; Samuel Canizales-Quinteros; Manuel Quiterio; Guillermo Cabrera-Alvarez; Nelly Patiño; Jorge Salmerón
Journal:  Mol Biol Rep       Date:  2016-10-17       Impact factor: 2.316

6.  Liver and adipose expression associated SNPs are enriched for association to type 2 diabetes.

Authors:  Hua Zhong; John Beaulaurier; Pek Yee Lum; Cliona Molony; Xia Yang; Douglas J Macneil; Drew T Weingarth; Bin Zhang; Danielle Greenawalt; Radu Dobrin; Ke Hao; Sangsoon Woo; Christine Fabre-Suver; Su Qian; Michael R Tota; Mark P Keller; Christina M Kendziorski; Brian S Yandell; Victor Castro; Alan D Attie; Lee M Kaplan; Eric E Schadt
Journal:  PLoS Genet       Date:  2010-05-06       Impact factor: 5.917

7.  The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Authors:  Thomas Derrien; Rory Johnson; Giovanni Bussotti; Andrea Tanzer; Sarah Djebali; Hagen Tilgner; Gregory Guernec; David Martin; Angelika Merkel; David G Knowles; Julien Lagarde; Lavanya Veeravalli; Xiaoan Ruan; Yijun Ruan; Timo Lassmann; Piero Carninci; James B Brown; Leonard Lipovich; Jose M Gonzalez; Mark Thomas; Carrie A Davis; Ramin Shiekhattar; Thomas R Gingeras; Tim J Hubbard; Cedric Notredame; Jennifer Harrow; Roderic Guigó
Journal:  Genome Res       Date:  2012-09       Impact factor: 9.043

8.  Biological, clinical and population relevance of 95 loci for blood lipids.

Authors:  Tanya M Teslovich; Kiran Musunuru; Albert V Smith; Andrew C Edmondson; Ioannis M Stylianou; Masahiro Koseki; James P Pirruccello; Samuli Ripatti; Daniel I Chasman; Cristen J Willer; Christopher T Johansen; Sigrid W Fouchier; Aaron Isaacs; Gina M Peloso; Maja Barbalic; Sally L Ricketts; Joshua C Bis; Yurii S Aulchenko; Gudmar Thorleifsson; Mary F Feitosa; John Chambers; Marju Orho-Melander; Olle Melander; Toby Johnson; Xiaohui Li; Xiuqing Guo; Mingyao Li; Yoon Shin Cho; Min Jin Go; Young Jin Kim; Jong-Young Lee; Taesung Park; Kyunga Kim; Xueling Sim; Rick Twee-Hee Ong; Damien C Croteau-Chonka; Leslie A Lange; Joshua D Smith; Kijoung Song; Jing Hua Zhao; Xin Yuan; Jian'an Luan; Claudia Lamina; Andreas Ziegler; Weihua Zhang; Robert Y L Zee; Alan F Wright; Jacqueline C M Witteman; James F Wilson; Gonneke Willemsen; H-Erich Wichmann; John B Whitfield; Dawn M Waterworth; Nicholas J Wareham; Gérard Waeber; Peter Vollenweider; Benjamin F Voight; Veronique Vitart; Andre G Uitterlinden; Manuela Uda; Jaakko Tuomilehto; John R Thompson; Toshiko Tanaka; Ida Surakka; Heather M Stringham; Tim D Spector; Nicole Soranzo; Johannes H Smit; Juha Sinisalo; Kaisa Silander; Eric J G Sijbrands; Angelo Scuteri; James Scott; David Schlessinger; Serena Sanna; Veikko Salomaa; Juha Saharinen; Chiara Sabatti; Aimo Ruokonen; Igor Rudan; Lynda M Rose; Robert Roberts; Mark Rieder; Bruce M Psaty; Peter P Pramstaller; Irene Pichler; Markus Perola; Brenda W J H Penninx; Nancy L Pedersen; Cristian Pattaro; Alex N Parker; Guillaume Pare; Ben A Oostra; Christopher J O'Donnell; Markku S Nieminen; Deborah A Nickerson; Grant W Montgomery; Thomas Meitinger; Ruth McPherson; Mark I McCarthy; Wendy McArdle; David Masson; Nicholas G Martin; Fabio Marroni; Massimo Mangino; Patrik K E Magnusson; Gavin Lucas; Robert Luben; Ruth J F Loos; Marja-Liisa Lokki; Guillaume Lettre; Claudia Langenberg; Lenore J Launer; Edward G Lakatta; Reijo Laaksonen; Kirsten O Kyvik; Florian Kronenberg; Inke R König; Kay-Tee Khaw; Jaakko Kaprio; Lee M Kaplan; Asa Johansson; Marjo-Riitta Jarvelin; A Cecile J W Janssens; Erik Ingelsson; Wilmar Igl; G Kees Hovingh; Jouke-Jan Hottenga; Albert Hofman; Andrew A Hicks; Christian Hengstenberg; Iris M Heid; Caroline Hayward; Aki S Havulinna; Nicholas D Hastie; Tamara B Harris; Talin Haritunians; Alistair S Hall; Ulf Gyllensten; Candace Guiducci; Leif C Groop; Elena Gonzalez; Christian Gieger; Nelson B Freimer; Luigi Ferrucci; Jeanette Erdmann; Paul Elliott; Kenechi G Ejebe; Angela Döring; Anna F Dominiczak; Serkalem Demissie; Panagiotis Deloukas; Eco J C de Geus; Ulf de Faire; Gabriel Crawford; Francis S Collins; Yii-der I Chen; Mark J Caulfield; Harry Campbell; Noel P Burtt; Lori L Bonnycastle; Dorret I Boomsma; S Matthijs Boekholdt; Richard N Bergman; Inês Barroso; Stefania Bandinelli; Christie M Ballantyne; Themistocles L Assimes; Thomas Quertermous; David Altshuler; Mark Seielstad; Tien Y Wong; E-Shyong Tai; Alan B Feranil; Christopher W Kuzawa; Linda S Adair; Herman A Taylor; Ingrid B Borecki; Stacey B Gabriel; James G Wilson; Hilma Holm; Unnur Thorsteinsdottir; Vilmundur Gudnason; Ronald M Krauss; Karen L Mohlke; Jose M Ordovas; Patricia B Munroe; Jaspal S Kooner; Alan R Tall; Robert A Hegele; John J P Kastelein; Eric E Schadt; Jerome I Rotter; Eric Boerwinkle; David P Strachan; Vincent Mooser; Kari Stefansson; Muredach P Reilly; Nilesh J Samani; Heribert Schunkert; L Adrienne Cupples; Manjinder S Sandhu; Paul M Ridker; Daniel J Rader; Cornelia M van Duijn; Leena Peltonen; Gonçalo R Abecasis; Michael Boehnke; Sekar Kathiresan
Journal:  Nature       Date:  2010-08-05       Impact factor: 49.962

9.  Expression and characterization of a PNPLA3 protein isoform (I148M) associated with nonalcoholic fatty liver disease.

Authors:  Yongcheng Huang; Jonathan C Cohen; Helen H Hobbs
Journal:  J Biol Chem       Date:  2011-08-30       Impact factor: 5.157

Review 10.  Considerations when investigating lncRNA function in vivo.

Authors:  Andrew R Bassett; Asifa Akhtar; Denise P Barlow; Adrian P Bird; Neil Brockdorff; Denis Duboule; Anne Ephrussi; Anne C Ferguson-Smith; Thomas R Gingeras; Wilfried Haerty; Douglas R Higgs; Eric A Miska; Chris P Ponting
Journal:  Elife       Date:  2014-08-14       Impact factor: 8.140

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  20 in total

1.  A multiancestry genome-wide association study of unexplained chronic ALT elevation as a proxy for nonalcoholic fatty liver disease with histological and radiological validation.

Authors:  Marijana Vujkovic; Shweta Ramdas; Daniel J Rader; Benjamin F Voight; Kyong-Mi Chang; Kim M Lorenz; Xiuqing Guo; Rebecca Darlay; Heather J Cordell; Jing He; Yevgeniy Gindin; Chuhan Chung; Robert P Myers; Carolin V Schneider; Joseph Park; Kyung Min Lee; Marina Serper; Rotonya M Carr; David E Kaplan; Mary E Haas; Matthew T MacLean; Walter R Witschey; Xiang Zhu; Catherine Tcheandjieu; Rachel L Kember; Henry R Kranzler; Anurag Verma; Ayush Giri; Derek M Klarin; Yan V Sun; Jie Huang; Jennifer E Huffman; Kate Townsend Creasy; Nicholas J Hand; Ching-Ti Liu; Michelle T Long; Jie Yao; Matthew Budoff; Jingyi Tan; Xiaohui Li; Henry J Lin; Yii-Der Ida Chen; Kent D Taylor; Ruey-Kang Chang; Ronald M Krauss; Silvia Vilarinho; Joseph Brancale; Jonas B Nielsen; Adam E Locke; Marcus B Jones; Niek Verweij; Aris Baras; K Rajender Reddy; Brent A Neuschwander-Tetri; Jeffrey B Schwimmer; Arun J Sanyal; Naga Chalasani; Kathleen A Ryan; Braxton D Mitchell; Dipender Gill; Andrew D Wells; Elisabetta Manduchi; Yedidya Saiman; Nadim Mahmud; Donald R Miller; Peter D Reaven; Lawrence S Phillips; Sumitra Muralidhar; Scott L DuVall; Jennifer S Lee; Themistocles L Assimes; Saiju Pyarajan; Kelly Cho; Todd L Edwards; Scott M Damrauer; Peter W Wilson; J Michael Gaziano; Christopher J O'Donnell; Amit V Khera; Struan F A Grant; Christopher D Brown; Philip S Tsao; Danish Saleheen; Luca A Lotta; Lisa Bastarache; Quentin M Anstee; Ann K Daly; James B Meigs; Jerome I Rotter; Julie A Lynch
Journal:  Nat Genet       Date:  2022-06-02       Impact factor: 41.307

Review 2.  Genetic Pathways in Nonalcoholic Fatty Liver Disease: Insights From Systems Biology.

Authors:  Silvia Sookoian; Carlos J Pirola; Luca Valenti; Nicholas O Davidson
Journal:  Hepatology       Date:  2020-07       Impact factor: 17.425

3.  Genetic Risk for Hepatic Fat among an Ethnically Diverse Cohort of Youth: The Exploring Perinatal Outcomes among Children Study.

Authors:  Maggie A Stanislawski; Jessica Shaw; Elizabeth Litkowski; Ethan M Lange; Wei Perng; Dana Dabelea; Leslie A Lange
Journal:  J Pediatr       Date:  2020-03-04       Impact factor: 4.406

4.  A Noncoding Variant Near PPP1R3B Promotes Liver Glycogen Storage and MetS, but Protects Against Myocardial Infarction.

Authors:  Bratati Kahali; Yue Chen; Mary F Feitosa; Lawrence F Bielak; Jeffrey R O'Connell; Solomon K Musani; Yash Hegde; Yanhua Chen; L C Stetson; Xiuqing Guo; Yi-Ping Fu; Albert Vernon Smith; Kathleen A Ryan; Gudny Eiriksdottir; Ariella T Cohain; Matthew Allison; Andrew Bakshi; Donald W Bowden; Matthew J Budoff; J Jeffrey Carr; Shannon Carskadon; Yii-Der I Chen; Adolfo Correa; Breland F Crudup; Xiaomeng Du; Tamara B Harris; Jian Yang; Sharon L R Kardia; Lenore J Launer; Jiankang Liu; Thomas H Mosley; Jill M Norris; James G Terry; Nallasivam Palanisamy; Eric E Schadt; Christopher J O'Donnell; Laura M Yerges-Armstrong; Jerome I Rotter; Lynne E Wagenknecht; Samuel K Handelman; Vilmundur Gudnason; Michael A Province; Patricia A Peyser; Brian Halligan; Nicholette D Palmer; Elizabeth K Speliotes
Journal:  J Clin Endocrinol Metab       Date:  2021-01-23       Impact factor: 5.958

5.  Protein phosphatase 1 regulatory subunit 3B gene variation protects against hepatic fat accumulation and fibrosis in individuals at high risk of nonalcoholic fatty liver disease.

Authors:  Paola Dongiovanni; Marica Meroni; Rosellina M Mancina; Guido Baselli; Raffaela Rametta; Serena Pelusi; Ville Männistö; Anna L Fracanzani; Sara Badiali; Luca Miele; Stefania Grimaudo; Salvatore Petta; Elisabetta Bugianesi; Giorgio Soardo; Silvia Fargion; Jussi Pihlajamäki; Stefano Romeo; Luca Valenti
Journal:  Hepatol Commun       Date:  2018-04-25

6.  Genetic Susceptibility to Chronic Liver Disease in Individuals from Pakistan.

Authors:  Asad Mehmood Raja; Ester Ciociola; Imran Nazir Ahmad; Faisal Saud Dar; Syed Muhammad Saqlan Naqvi; Muhammad Moaeen-Ud-Din; Ghazala Kaukab Raja; Stefano Romeo; Rosellina Margherita Mancina
Journal:  Int J Mol Sci       Date:  2020-05-18       Impact factor: 5.923

7.  Nonconserved Long Intergenic Noncoding RNAs Associate With Complex Cardiometabolic Disease Traits.

Authors:  Andrea S Foulkes; Caitlin Selvaggi; Tingyi Cao; Marcella E O'Reilly; Esther Cynn; Puyang Ma; Heidi Lumish; Chenyi Xue; Muredach P Reilly
Journal:  Arterioscler Thromb Vasc Biol       Date:  2020-11-12       Impact factor: 8.311

Review 8.  The β Cell in Diabetes: Integrating Biomarkers With Functional Measures.

Authors:  Steven E Kahn; Yi-Chun Chen; Nathalie Esser; Austin J Taylor; Daniël H van Raalte; Sakeneh Zraika; C Bruce Verchere
Journal:  Endocr Rev       Date:  2021-09-28       Impact factor: 25.261

9.  Evaluation of Polygenic Determinants of Non-Alcoholic Fatty Liver Disease (NAFLD) By a Candidate Genes Resequencing Strategy.

Authors:  Alessia Di Costanzo; Francesca Belardinilli; Diego Bailetti; Marialuisa Sponziello; Laura D'Erasmo; Licia Polimeni; Francesco Baratta; Daniele Pastori; Fabrizio Ceci; Anna Montali; Gabriella Girelli; Bruna De Masi; Antonio Angeloni; Giuseppe Giannini; Maria Del Ben; Francesco Angelico; Marcello Arca
Journal:  Sci Rep       Date:  2018-02-27       Impact factor: 4.379

10.  Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning.

Authors:  E Louise Thomas; Madeleine Cule; Yi Liu; Nicolas Basty; Brandon Whitcher; Jimmy D Bell; Elena P Sorokin; Nick van Bruggen
Journal:  Elife       Date:  2021-06-15       Impact factor: 8.140

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