Literature DB >> 29266437

Genomic classifications of renal cell carcinoma: a critical step towards the future application of personalized kidney cancer care with pan-omics precision.

James J Hsieh1, Valerie Le1, Dengfeng Cao2, Emily H Cheng3, Chad J Creighton4.   

Abstract

Over the past 20 years, classifications of kidney cancer have undergone major revisions based on morphological refinements and molecular characterizations. The 2016 WHO classification of renal tumors recognizes more than ten different renal cell carcinoma (RCC) subtypes. Furthermore, the marked inter- and intra-tumor heterogeneity of RCC is now well appreciated. Nevertheless, contemporary multi-omics studies of RCC, encompassing genomics, transcriptomics, proteomics, and metabolomics, not only highlight apparent diversity but also showcase and underline commonality. Here, we wish to provide an integrated perspective concerning the future 'functional' classification of renal cancer by bridging gaps among morphology, biology, multi-omics, and therapeutics. This review focuses on recent progress and elaborates the potential value of contemporary pan-omics approaches with a special emphasis on cancer genomics unveiled through next-generation sequencing technology, and how an integrated multi-omics approach might impact precision-based personalized kidney cancer care in the near future.
Copyright © 2017 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd. Copyright © 2017 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.

Entities:  

Keywords:  biomarkers; genomics; metabolomics; personalized medicine; precision therapeutics; proteomics; renal cell carcinoma; targeted therapy; transcriptomics

Mesh:

Substances:

Year:  2018        PMID: 29266437     DOI: 10.1002/path.5022

Source DB:  PubMed          Journal:  J Pathol        ISSN: 0022-3417            Impact factor:   7.996


  42 in total

1.  Whole slide images reflect DNA methylation patterns of human tumors.

Authors:  Hong Zheng; Alexandre Momeni; Pierre-Louis Cedoz; Hannes Vogel; Olivier Gevaert
Journal:  NPJ Genom Med       Date:  2020-03-10       Impact factor: 8.617

2.  Differentiation of clear cell and non-clear cell renal cell carcinomas by all-relevant radiomics features from multiphase CT: a VHL mutation perspective.

Authors:  Zhi-Cheng Li; Guangtao Zhai; Jinheng Zhang; Zhongqiu Wang; Guiqin Liu; Guang-Yu Wu; Dong Liang; Hairong Zheng
Journal:  Eur Radiol       Date:  2018-12-06       Impact factor: 5.315

Review 3.  Moving pan-cancer studies from basic research toward the clinic.

Authors:  Feng Chen; Michael C Wendl; Matthew A Wyczalkowski; Matthew H Bailey; Yize Li; Li Ding
Journal:  Nat Cancer       Date:  2021-09-16

4.  Chromophobe Renal Cell Carcinoma with Radiologic-Pathologic Correlation.

Authors:  Jamie Marko; Ryan Craig; Andrew Nguyen; Aaron M Udager; Darcy J Wolfman
Journal:  Radiographics       Date:  2021-08-13       Impact factor: 6.312

Review 5.  The Role of DNA Methylation in Renal Cell Carcinoma.

Authors:  Brittany N Lasseigne; James D Brooks
Journal:  Mol Diagn Ther       Date:  2018-08       Impact factor: 4.074

6.  Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma.

Authors:  David J Clark; Saravana M Dhanasekaran; Francesca Petralia; Jianbo Pan; Xiaoyu Song; Yingwei Hu; Felipe da Veiga Leprevost; Boris Reva; Tung-Shing M Lih; Hui-Yin Chang; Weiping Ma; Chen Huang; Christopher J Ricketts; Lijun Chen; Azra Krek; Yize Li; Dmitry Rykunov; Qing Kay Li; Lin S Chen; Umut Ozbek; Suhas Vasaikar; Yige Wu; Seungyeul Yoo; Shrabanti Chowdhury; Matthew A Wyczalkowski; Jiayi Ji; Michael Schnaubelt; Andy Kong; Sunantha Sethuraman; Dmitry M Avtonomov; Minghui Ao; Antonio Colaprico; Song Cao; Kyung-Cho Cho; Selim Kalayci; Shiyong Ma; Wenke Liu; Kelly Ruggles; Anna Calinawan; Zeynep H Gümüş; Daniel Geiszler; Emily Kawaler; Guo Ci Teo; Bo Wen; Yuping Zhang; Sarah Keegan; Kai Li; Feng Chen; Nathan Edwards; Phillip M Pierorazio; Xi Steven Chen; Christian P Pavlovich; A Ari Hakimi; Gabriel Brominski; James J Hsieh; Andrzej Antczak; Tatiana Omelchenko; Jan Lubinski; Maciej Wiznerowicz; W Marston Linehan; Christopher R Kinsinger; Mathangi Thiagarajan; Emily S Boja; Mehdi Mesri; Tara Hiltke; Ana I Robles; Henry Rodriguez; Jiang Qian; David Fenyö; Bing Zhang; Li Ding; Eric Schadt; Arul M Chinnaiyan; Zhen Zhang; Gilbert S Omenn; Marcin Cieslik; Daniel W Chan; Alexey I Nesvizhskii; Pei Wang; Hui Zhang
Journal:  Cell       Date:  2019-10-31       Impact factor: 41.582

7.  Circ_RPL23A acts as a miR-1233 sponge to suppress the progression of clear cell renal cell carcinoma by promoting ACAT2.

Authors:  Liang Cheng; Huifeng Cao; Jianbo Xu; Mo Xu; Wenjie He; Wenjing Zhang; Longxin Dong; Dayin Chen
Journal:  J Bioenerg Biomembr       Date:  2021-05-25       Impact factor: 2.945

Review 8.  The Therapeutic Landscape of Renal Cell Carcinoma: From the Dark Age to the Golden Age.

Authors:  Jennifer J Huang; James J Hsieh
Journal:  Semin Nephrol       Date:  2020-01       Impact factor: 5.299

9.  Eligibility and Radiologic Assessment for Adjuvant Clinical Trials in Kidney Cancer.

Authors:  Sundeep Agrawal; Naomi B Haas; Mohammadhadi Bagheri; Brian R Lane; Jonathan Coleman; Hans Hammers; Gennady Bratslavsky; Cynthia Chauhan; Lauren Kim; Venkatesh P Krishnasamy; Jamie Marko; Virginia Ellen Maher; Amna Ibrahim; Frank Cross; Ke Liu; Julia A Beaver; Richard Pazdur; Gideon M Blumenthal; Harpreet Singh; Elizabeth R Plimack; Toni K Choueiri; Robert Uzzo; Andrea B Apolo
Journal:  JAMA Oncol       Date:  2020-01-01       Impact factor: 31.777

Review 10.  Chromosome 3p Loss-Orchestrated VHL, HIF, and Epigenetic Deregulation in Clear Cell Renal Cell Carcinoma.

Authors:  James J Hsieh; Valerie H Le; Toshinao Oyama; Christopher J Ricketts; Thai Huu Ho; Emily H Cheng
Journal:  J Clin Oncol       Date:  2018-10-29       Impact factor: 44.544

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