Literature DB >> 29263832

To the editor.

Electron Kebebew1,2, Sudheer Kumar Gara1.   

Abstract

Entities:  

Year:  2017        PMID: 29263832      PMCID: PMC5677958          DOI: 10.1038/s41525-017-0026-3

Source DB:  PubMed          Journal:  NPJ Genom Med        ISSN: 2056-7944            Impact factor:   8.617


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We read the article by Gerhard and colleagues with interest.[1] They report that they have identified a ZNF23 rs531705739 variant (T40R) by reanalyzing the whole exome sequencing data we shared with them in a kindred we reported on earlier.[2] We greatly appreciate their effort and interest to reanalyze our data independently. Based on their reanalysis of our whole exome sequencing data, the ZNF23 rs531705739 variant segregated with affected members in the kindred and was not present in unrelated spouses. They also report a noncoding region that segregates with affected members but do not specify the sequence. We performed Sanger sequencing of peripheral blood DNA from the kindred to experimentally validate the findings of Gerhard et al. Although we could validate the ZNF23 rs531705739 variant (T40R) segregates with six affected family members, two additional family members who developed thyroid cancer during surveillance do not have the variant (Fig. 1). Although, several groups have not validated complete segregation of the HABP2 (G434E) variant in affected members with familial non-medullary thyroid cancer, the HABP2 rs7080536 variant (G434E) completely segregates in all the affected members in the kindred including the two newly diagnosed members during surveillance (Fig. 1). We appreciate the efforts of colleagues to independently validate our data as this is the only way we will be able to make progress in identifying true susceptibility gene(s) that cause familial nonmedullary thyroid cancer.
Fig. 1

The family pedigree showing the status of ZNF23_T40R and HABP2_G534E variant with respect to non-medullary thyroid cancer. Squares denote male family members, circles female members, shaded symbols affected members and slashes deceased members

The family pedigree showing the status of ZNF23_T40R and HABP2_G534E variant with respect to non-medullary thyroid cancer. Squares denote male family members, circles female members, shaded symbols affected members and slashes deceased members
  2 in total

1.  Germline HABP2 Mutation Causing Familial Nonmedullary Thyroid Cancer.

Authors:  Sudheer Kumar Gara; Li Jia; Maria J Merino; Sunita K Agarwal; Lisa Zhang; Maggie Cam; Dhaval Patel; Electron Kebebew
Journal:  N Engl J Med       Date:  2015-07-30       Impact factor: 91.245

2.  Pitfalls of exome sequencing: a case study of the attribution of HABP2 rs7080536 in familial non-medullary thyroid cancer.

Authors:  Glenn S Gerhard; Darrin V Bann; James Broach; David Goldenberg
Journal:  NPJ Genom Med       Date:  2017-03-28       Impact factor: 8.617

  2 in total

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