Literature DB >> 29262306

Complete mitochondrial genome of Odontobutis haifengensis (Perciformes, Odontobutiae): A unique rearrangement of tRNAs and additional non-coding regions identified in the genus Odontobutis.

Liqiang Zhong1, Minghua Wang2, Daming Li2, Shengkai Tang2, Tongqing Zhang2, Wenji Bian2, Xiaohui Chen3.   

Abstract

Herein, the complete mitochondrial genome of Odontobutis haifengensis was sequenced for the first time. The O. haifengensis mitogenome was 17,016bp in length and included 13 protein-coding genes, 22 transfer RNAs (tRNAs), 2 ribosomal RNAs (rRNAs), and a control region (CR). The genome organization, base composition, codon usage, and gene rearrangement was similar to other Odontobutis species. Furthermore, a tRNA gene rearrangement within the SLH cluster was found to be identical to other Odontobutis species. Moreover, the gene order and the positions of additional intergenic non-coding regions suggests that the observed unique gene rearrangement resulted from a tandem duplication and random loss of large-scale gene regions. Additionally, phylogenetic analysis showed that Odontobutis species form a monophyletic clade due to the conserved mitochondrial gene rearrangement. This study provides useful information that aids in a better understanding of mitogenomic diversity and evolutionary patterns of Odontobutidae species.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Gene rearrangement; Mitochondrial genome; Odontobutis haifengensis; Phylogenetic analysis

Mesh:

Substances:

Year:  2017        PMID: 29262306     DOI: 10.1016/j.ygeno.2017.12.008

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  4 in total

1.  Panorama of intron dynamics and gene rearrangements in the phylum Basidiomycota as revealed by the complete mitochondrial genome of Turbinellus floccosus.

Authors:  Jie Cheng; Qing Luo; Yuanhang Ren; Zhou Luo; Wenlong Liao; Xu Wang; Qiang Li
Journal:  Appl Microbiol Biotechnol       Date:  2021-02-08       Impact factor: 4.813

2.  Comparative mitochondrial genome analyses reveal conserved gene arrangement but massive expansion/contraction in two closely related Exserohilum pathogens.

Authors:  Qingzhou Ma; Yuehua Geng; Qiang Li; Chongyang Cheng; Rui Zang; Yashuang Guo; Haiyan Wu; Chao Xu; Meng Zhang
Journal:  Comput Struct Biotechnol J       Date:  2022-03-21       Impact factor: 7.271

3.  Comparative Mitogenomic Analysis Reveals Intraspecific, Interspecific Variations and Genetic Diversity of Medical Fungus Ganoderma.

Authors:  Qiang Li; Ting Zhang; Lijiao Li; Zhijie Bao; Wenying Tu; Peng Xiang; Qian Wu; Ping Li; Mei Cao; Wenli Huang
Journal:  J Fungi (Basel)       Date:  2022-07-26

4.  The complete mitochondrial genome of medicinal fungus Taiwanofungus camphoratus reveals gene rearrangements and intron dynamics of Polyporales.

Authors:  Xu Wang; Lihua Jia; Mingdao Wang; Hao Yang; Mingyue Chen; Xiao Li; Hanyu Liu; Qiang Li; Na Liu
Journal:  Sci Rep       Date:  2020-10-05       Impact factor: 4.379

  4 in total

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