Literature DB >> 29259884

Assessment of genetic diversity in lettuce (Lactuca sativa L.) germplasm using RAPD markers.

Shubhangi Sharma1, Pankaj Kumar1, Geetika Gambhir1, Ramesh Kumar2, D K Srivastava1.   

Abstract

The importance of germplasm characterization is an important link between the conservation and utilization of plant genetic resources in various breeding programmes. In the present study, genetic variability and relationships among 25 Lactuca sativa L. genotypes were tested using random amplified polymorphic DNA (RAPD) molecular markers. A total of 45 random decamer oligonucleotide primers were examined to generate RAPD profiles, out of these reproducible patterns were obtained with 22 primers. A total of 87 amplicon were obtained, out of which all were polymorphic and 7 were unique bands. The level of polymorphism across genotypes was 100% as revealed by RAPD. Genetic similarity matrix, based on Jaccard's coefficients ranged from 13.7 to 84.10% indicating a wide genetic base. Dendrogram was constructed by unweighted pair group method with arithmetic averages method. RAPD technology could be useful for identification of different accessions as well as assessing the genetic similarity among different genotypes of lettuce. The study reveals the limited genetic base and the needs to diversify using new sources from the germplasm.

Entities:  

Keywords:  Genetic diversity; Lactuca sativa L.; Molecular markers; RAPD

Year:  2017        PMID: 29259884      PMCID: PMC5723581          DOI: 10.1007/s13205-017-1039-4

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  3 in total

1.  DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.

Authors:  J G Williams; A R Kubelik; K J Livak; J A Rafalski; S V Tingey
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

2.  Analysis of a detailed genetic linkage map of Lactuca sativa (lettuce) constructed from RFLP and RAPD markers.

Authors:  R V Kesseli; I Paran; R W Michelmore
Journal:  Genetics       Date:  1994-04       Impact factor: 4.562

3.  Fingerprinting genomes using PCR with arbitrary primers.

Authors:  J Welsh; M McClelland
Journal:  Nucleic Acids Res       Date:  1990-12-25       Impact factor: 16.971

  3 in total
  2 in total

1.  Genome-wide core sets of SNP markers and Fluidigm assays for rapid and effective genotypic identification of Korean cultivars of lettuce (Lactuca sativa L.).

Authors:  Jee-Soo Park; Min-Young Kang; Eun-Jo Shim; JongHee Oh; Kyoung-In Seo; Kyung Seok Kim; Sung-Chur Sim; Sang-Min Chung; Younghoon Park; Gung Pyo Lee; Won-Sik Lee; Minkyung Kim; Jin-Kee Jung
Journal:  Hortic Res       Date:  2022-05-26       Impact factor: 7.291

2.  A Comparison of Landraces vs. Modern Varieties of Lettuce in Organic Farming During the Winter in the Mediterranean Area: An Approach Considering the Viewpoints of Breeders, Consumers, and Farmers.

Authors:  Joan Casals Missio; Ana Rivera; Maria Rosario Figàs; Cristina Casanova; Borja Camí; Salvador Soler; Joan Simó
Journal:  Front Plant Sci       Date:  2018-10-18       Impact factor: 5.753

  2 in total

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