| Literature DB >> 29258485 |
Mohamed Aït Hamza1,2, Nadine Ali3,4, Johannes Tavoillot3, Odile Fossati-Gaschignard3, Hassan Boubaker5, Abdelhamid El Mousadik6, Thierry Mateille3.
Abstract
BACKGROUND: Root-knot nematodes (RKN) are major pest of olive tree (Olea europaea ssp. europaea), especially in nurseries and high-density orchards. Soil samples were collected from main olive growing areas of Morocco, to characterize Meloidogyne species and to discuss the contribution of biotic and abiotic factors in their spatial distribution.Entities:
Keywords: Distribution; Diversity; Invasion; Meloidogyne; Morocco; Nursery; Olive; Orchard; Species identification
Mesh:
Substances:
Year: 2017 PMID: 29258485 PMCID: PMC5735543 DOI: 10.1186/s12898-017-0153-9
Source DB: PubMed Journal: BMC Ecol ISSN: 1472-6785 Impact factor: 2.964
Fig. 1Distribution of the olive nurseries (a) and orchards (b) surveyed in Morocco
Location and characteristics of the olive nurseries and orchards surveyed in Morocco
| Location | Nurseries | Orchards | ||||||
|---|---|---|---|---|---|---|---|---|
| Geographic region | City | No. of nurseries | Main habitat origin of the substrates | Olive cultivar | No. of samples | No. of sites | Growing system | Olive cultivar |
| Rif | Asilah | 1 | Traditional | Picholine marocaine | ||||
| Chefchaouen | 2 | Traditional | Picholine marocaine | |||||
| Jbala | Ouazzane | 1 | Clay marls, | Picholine marocaine | 5 | 5 | Traditional | Picholine marocaine |
| Haouzia | 5 | |||||||
| Menara | 5 | |||||||
| Guerouane | Meknes | 4 | Yellow sand, | Picholine marocaine | 15 | 4 | High density | Picholine marocaine |
| Haouzia | 20 | 3 | Traditional | Picholine marocaine | ||||
| Menara | 20 | |||||||
| Arbequina | 5 | |||||||
| Arbosana | 5 | |||||||
| Picual | 10 | |||||||
| Picholine Languedoc | 5 | |||||||
| El Hajeb | 2 | High density | Picholine marocaine | |||||
| 2 | Traditional | Picholine marocaine | ||||||
| Kandar | Sefrou | 5 | Traditional | Picholine marocaine | ||||
| Jel | Taza | 3 | Traditional | Picholine marocaine | ||||
| Msoun | 2 | Traditional | Picholine marocaine | |||||
| Tadla | Beni Mellal | 1 | Traditional | Picholine marocaine | ||||
| Haouz | Marrakech | 5 | Clay marls, | Picholine marocaine | 25 | 7 | Traditional | Picholine marocaine |
| Arbequina | 10 | 2 | High density | Arbequina + Picual + Koroneiki | ||||
| Haouzia | 25 | |||||||
| Menara | 25 | |||||||
| Picholine Languedoc | 10 | |||||||
| Arbosana | 5 | |||||||
| El Kelaa des Sraghna | 3 | Forest soil | Picholine marocaine | 15 | 1 | Traditional | Picholine marocaine | |
| Picholine Languedoc | 15 | |||||||
| Menara | 10 | |||||||
| Haouzia | 10 | |||||||
| Sidi Abdellah Ghiat | 1 | Soil, clay and sand | Picholine marocaine | 5 | ||||
| Rehamma | 1 | High density | Picholine marocaine | |||||
| Tammelalt | 1 | Traditional | Picholine marocaine | |||||
| Sidi Bou Othmane | 1 | Traditional | Picholine marocaine | |||||
| Tahannaout | 1 | Traditional | Picholine marocaine | |||||
| Souss | Agadir | 8 | Sand, topsoil | Picholine marocaine | 15 | |||
| Haouzia | 20 | |||||||
| Menara | 5 | |||||||
| Khmiss Aït Amira | 2 | Topsoil, peat, manure | Picholine marocaine | 10 | ||||
| Biougra | 1 | Peat, soil and perlite | Menara | 5 | ||||
| Taroudant | 2 | Traditional | Picholine marocaine | |||||
| Ouled Taima | 1 | Traditional | Picholine marocaine | |||||
| Ouled Berhil | 1 | Traditional | Picholine marocaine | |||||
| Aoulouz | 1 | Traditional | Picholine marocaine | |||||
Fig. 2Bioclimatic diagram of the areas sampled [27]
Variables considered in the data analyses and corresponding codes
| Variables | Code | Variables | Code |
|---|---|---|---|
|
|
| ||
| Jbala | J | Coarse sand | cSa |
| Guerouane | G | Fine sand | fSa |
| Haouz | H | Coarse silt | cSi |
| Souss | S | Fine silt | fSi |
| Clay | Cla | ||
|
| Organic matter | OM | |
| Minimum temperature | MACM | Nitrogen | N |
| Annual rainfall | AR | Phosphorus | P |
| Potassium | K | ||
|
| pH | pH | |
| Crop topsoil | Crop | Conductivity | Con |
| Forest | Forest | ||
| Riverbank | River | ||
Fig. 3Biochemical and molecular patterns of Meloidogyne populations collected from cultivated olive soils in Morocco. a Species-specific esterase phenotypes detected (R: M. javanica reference population; Rm: relative migration; 1–6: number of specific bands according to M. javanica reference population). b Species-specific SCAR phenotypes detected
Biochemical and molecular diagnostics of the Meloidogyne species associated with olive trees in Morocco
| Geographic region | Nursery | Patterns | Validated species (occurrence%) | |
|---|---|---|---|---|
| Est | SCARs | |||
| Nurseries | ||||
| Souss | 1 |
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| 2 |
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| 3 |
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| 4 |
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| 5 |
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| 8 |
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| 9 |
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| 10 |
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| 11 |
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| Haouz | 12 |
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| 13 |
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| 14 |
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| 15 |
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| 16 |
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| 18 |
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| 19 |
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| 20 |
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| Guerouane | 21 |
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| 22 |
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| 23 |
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| 24 |
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| Jbala | 25 |
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| Orchards | ||||
| Souss | 252 |
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| 253 |
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| Haouz | 255 | No multiplication on tomato |
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| 258 |
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| 259 |
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| 260 |
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| 261 |
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| 262 |
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| 285 |
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| 383 |
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| Tadla | 308 |
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| 309 |
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| Guerouane | 410 |
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Est esterase isozyme phenotype, SCAR sequence characterised amplified regions
Fig. 4Boxplots for Meloidogyne species in the olive nurseries sampled according to the regions surveyed (J Jbala, G Guerouane; H Haouz; S Souss) (a–d indicates significant groups, P < 0.05)
Fig. 5Multiblock analysis between the abundance of the Meloidogyne species and the substrate origins and the environmental factors in the olive nurseries. a PCA loading plot of the abundance of the Meloidogyne species; b score plot for the olive samples. c PCA loading plot of the environmental factors
Fig. 6Spatial distribution and abundance of the Meloidogyne species identified in nurseries (a) and orchards (b)