Literature DB >> 29256120

Salt-induced formations of partially folded intermediates and amyloid fibrils suggests a common underlying mechanism.

Yuji Goto1, Masayuki Adachi2, Hiroya Muta2, Masatomo So2.   

Abstract

Amyloid fibrils are misfolded forms of proteins and are involved in various diseases. They have been studied extensively with the aim to obtain a comprehensive understanding of protein folding and misfolding and to use this knowledge to develop therapeutic strategies against the associated diseases. Salt conditions are important factors determining the formation and stability of amyloid fibrils. In the 1990s, salt effects were studied extensively to understand the conformational stability of acid-denatured proteins, and the results of these studies revealed the role of electrostatic repulsion in forming the compact intermediate states. In this review, we compare the effects of salts on the compact intermediate states with those on the formation of amyloid fibrils under acidic conditions. The results argue that both protein folding and misfolding are driven by the same forces, although the resultant conformations are distinct because they are monomeric and multimeric reactions, respectively.

Entities:  

Keywords:  Amorphous aggregation; Amyloid fibril; Molten globule; Protein folding/misfolding; Salt effects; Supersaturation

Year:  2017        PMID: 29256120      PMCID: PMC5899729          DOI: 10.1007/s12551-017-0370-7

Source DB:  PubMed          Journal:  Biophys Rev        ISSN: 1867-2450


  62 in total

Review 1.  Protein folding and misfolding.

Authors:  Christopher M Dobson
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

2.  Direct measurement of the thermodynamic parameters of amyloid formation by isothermal titration calorimetry.

Authors:  József Kardos; Kaori Yamamoto; Kazuhiro Hasegawa; Hironobu Naiki; Yuji Goto
Journal:  J Biol Chem       Date:  2004-10-19       Impact factor: 5.157

Review 3.  Structural stability of amyloid fibrils of beta(2)-microglobulin in comparison with its native fold.

Authors:  Eri Chatani; Yuji Goto
Journal:  Biochim Biophys Acta       Date:  2005-08-24

4.  Heat of supersaturation-limited amyloid burst directly monitored by isothermal titration calorimetry.

Authors:  Tatsuya Ikenoue; Young-Ho Lee; József Kardos; Hisashi Yagi; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

Review 5.  Inhibition of protein aggregation and amyloid formation by small molecules.

Authors:  Andrew J Doig; Philippe Derreumaux
Journal:  Curr Opin Struct Biol       Date:  2015-01-02       Impact factor: 6.809

6.  Supersaturation-Limited and Unlimited Phase Spaces Compete to Produce Maximal Amyloid Fibrillation near the Critical Micelle Concentration of Sodium Dodecyl Sulfate.

Authors:  Masatomo So; Akira Ishii; Yasuko Hata; Hisashi Yagi; Hironobu Naiki; Yuji Goto
Journal:  Langmuir       Date:  2015-08-28       Impact factor: 3.882

7.  A back hydrogen exchange procedure via the acid-unfolded state for a large protein.

Authors:  Mototaka Suzuki; Kazumasa Sakurai; Young-Ho Lee; Takahisa Ikegami; Keiichi Yokoyama; Yuji Goto
Journal:  Biochemistry       Date:  2012-07-03       Impact factor: 3.162

8.  The monomer-seed interaction mechanism in the formation of the β2-microglobulin amyloid fibril clarified by solution NMR techniques.

Authors:  Kotaro Yanagi; Kazumasa Sakurai; Yuichi Yoshimura; Tsuyoshi Konuma; Young-Ho Lee; Kenji Sugase; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
Journal:  J Mol Biol       Date:  2012-06-06       Impact factor: 5.469

9.  Heparin-dependent aggregation of hen egg white lysozyme reveals two distinct mechanisms of amyloid fibrillation.

Authors:  Ayame Nitani; Hiroya Muta; Masayuki Adachi; Masatomo So; Kenji Sasahara; Kazumasa Sakurai; Eri Chatani; Kazumitsu Naoe; Hirotsugu Ogi; Damien Hall; Yuji Goto
Journal:  J Biol Chem       Date:  2017-11-03       Impact factor: 5.157

10.  Nucleation of protein fibrillation by nanoparticles.

Authors:  Sara Linse; Celia Cabaleiro-Lago; Wei-Feng Xue; Iseult Lynch; Stina Lindman; Eva Thulin; Sheena E Radford; Kenneth A Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-07       Impact factor: 11.205

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  9 in total

1.  Exploration of Insulin Amyloid Polymorphism Using Raman Spectroscopy and Imaging.

Authors:  Mika Ishigaki; Kana Morimoto; Eri Chatani; Yukihiro Ozaki
Journal:  Biophys J       Date:  2020-05-04       Impact factor: 4.033

2.  Possible mechanisms of polyphosphate-induced amyloid fibril formation of β2-microglobulin.

Authors:  Chun-Ming Zhang; Keiichi Yamaguchi; Masatomo So; Kenji Sasahara; Toru Ito; Suguru Yamamoto; Ichiei Narita; József Kardos; Hironobu Naiki; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-10       Impact factor: 11.205

3.  Foreword to 'Multiscale structural biology: biophysical principles and mechanisms underlying the action of bio-nanomachines', a special issue in Honour of Fumio Arisaka's 70th birthday.

Authors:  Damien Hall; Junichi Takagi; Haruki Nakamura
Journal:  Biophys Rev       Date:  2018-03-02

4.  Insights into Cerebral Amyloid Angiopathy Type 1 and Type 2 from Comparisons of the Fibrillar Assembly and Stability of the Aβ40-Iowa and Aβ40-Dutch Peptides.

Authors:  Jitika Rajpoot; Elliot J Crooks; Brandon A Irizarry; Ashley Amundson; William E Van Nostrand; Steven O Smith
Journal:  Biochemistry       Date:  2022-06-06       Impact factor: 3.321

5.  Nicking and fragmentation are responsible for α-lactalbumin amyloid fibril formation at acidic pH and elevated temperature.

Authors:  Rajesh Mishra
Journal:  Protein Sci       Date:  2021-06-17       Impact factor: 6.993

6.  Polyphenol-solubility alters amyloid fibril formation of α-synuclein.

Authors:  Masatomo So; Yuto Kimura; Keiichi Yamaguchi; Toshihiko Sugiki; Toshimichi Fujiwara; Cesar Aguirre; Kensuke Ikenaka; Hideki Mochizuki; Yasushi Kawata; Yuji Goto
Journal:  Protein Sci       Date:  2021-06-02       Impact factor: 6.993

7.  FTIR Spectroscopy Study of the Secondary Structure Changes in Human Serum Albumin and Trypsin under Neutral Salts.

Authors:  Dmitrii Usoltsev; Vera Sitnikova; Andrey Kajava; Mayya Uspenskaya
Journal:  Biomolecules       Date:  2020-04-14

8.  Cu/Zn-superoxide dismutase forms fibrillar hydrogels in a pH-dependent manner via a water-rich extended intermediate state.

Authors:  Noriko Fujiwara; Michiru Wagatsuma; Naoto Oba; Daisaku Yoshihara; Eiichi Tokuda; Haruhiko Sakiyama; Hironobu Eguchi; Motoko Ichihashi; Yoshiaki Furukawa; Tadashi Inoue; Keiichiro Suzuki
Journal:  PLoS One       Date:  2018-10-05       Impact factor: 3.240

Review 9.  Using protein engineering to understand and modulate aggregation.

Authors:  Jessica S Ebo; Nicolas Guthertz; Sheena E Radford; David J Brockwell
Journal:  Curr Opin Struct Biol       Date:  2020-02-19       Impact factor: 6.809

  9 in total

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