| Literature DB >> 29254148 |
Weifeng Tang1, Jianchao Liu1, Yafeng Wang2, Yanchao Chen3, Mingqiang Kang4,5,6, Jun Yin1, Chao Liu1, Jing Lin7, Yu Chen7,8,9.
Abstract
Esophagogastric junction adenocarcinoma (EGJA) is a serious public health problem with high mortality in China. In this study, we assessed the association between Paraoxonase 1 (PON-1) rs662 C>T, rs854560 A>T polymorphisms and EGJA risk. This case-control study enrolled 2,740 participants of Asians origin from the Eastern Chinese Han populations. SNPscanTM genotyping assay was harnessed to determine the genotyping of PON1 polymorphisms. The PON-1 rs854560 A>T and rs662 C>T genotypes distribution accorded with Hardy-Weinberg equilibrium. We found that there was no difference in the frequency of PON-1 rs662 C>T, rs854560 A>T genotypes between the overall EGJA cases and controls. In the subgroup analyses, the results indicated that PON-1 rs662 C>T polymorphism might be associated with a significantly decreased risk of EGJA in ever smoking group (TT vs. CC/CT: adjusted OR = 0.58, 95% CI 0.35-0.95, P = 0.029). In conclusion, our study highlights PON-1 rs662 C>T polymorphism may decrease the risk of EGJA, which interacts with the tobacco using. In the future, a fine-mapping case-control study with detailed gene-environmental data is needed to further assess these potential relationship.Entities:
Keywords: PON1; esophagogastric junction adenocarcinoma; polymorphism
Year: 2017 PMID: 29254148 PMCID: PMC5731858 DOI: 10.18632/oncotarget.20104
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Distribution of selected demographic variables and risk factors
| Variable | Overall Cases ( | Overall Controls ( | |||
|---|---|---|---|---|---|
| % | % | ||||
| Age (years) | 64.19 (± 8.63) | 63.91 (± 10.22) | 0.451 | ||
| Age (years) | 0.165 | ||||
| < 64 | 494 | 46.47 | 825 | 49.19 | |
| ≥ 64 | 569 | 53.53 | 852 | 50.81 | |
| Sex | 0.909 | ||||
| Female | 304 | 28.60 | 483 | 28.80 | |
| Male | 759 | 71.40 | 1194 | 71.20 | |
| Smoking status | < 0.001 | ||||
| Never | 773 | 72.72 | 1323 | 78.89 | |
| Ever | 290 | 27.28 | 354 | 21.11 | |
| Alcohol use | < 0.001 | ||||
| Never | 908 | 85.42 | 1507 | 89.86 | |
| Ever | 155 | 14.58 | 170 | 10.14 | |
a Two-sided χ2 test and Student t test.
Primary information for PON1 polymorphisms (rs854560 A>T and rs662 C>T)
| Genotyped polymorphisms | rs854560 A>T | rs662 C>T |
|---|---|---|
| Chr | 7 | 7 |
| NCBI Build 38a | 95316772 | 95308134 |
| Functiona | missense (dbSNP) | missense (dbSNP) |
| Minor allele frequency a for Chinese in database a | 0.03 | 0.43 |
| Minor allele frequency in our controls ( | 0.03 | 0.36 |
| 0.733 | 0.632 | |
| % Genotyping value | 99.09 | 99.09 |
a http://gvs.gs.washington.edu/GVS147/
bHWE: Hardy–Weinberg equilibrium.
The frequencies of PON1 rs854560 A>T and rs662 C>T polymorphisms
| Genotype | Overall EGJA case ( | Overall Controls ( | ||
|---|---|---|---|---|
| % | % | |||
| rs854560 A>T | ||||
| AA | 971 | 93.28 | 1573 | 93.97 |
| AT | 69 | 6.63 | 99 | 5.91 |
| TT | 1 | 0.10 | 2 | 0.12 |
| AT + TT | 70 | 6.72 | 101 | 6.03 |
| AA + AT | 1040 | 99.90 | 1,672 | 99.88 |
| T allele | 71 | 3.41 | 103 | 3.08 |
| rs662 C>T | ||||
| CC | 408 | 39.19 | 691 | 41.28 |
| CT | 501 | 48.13 | 776 | 46.36 |
| TT | 132 | 12.68 | 207 | 12.37 |
| TT + CT | 633 | 60.81 | 983 | 58.72 |
| CT + CC | 909 | 87.32 | 1,467 | 87.63 |
| T allele | 765 | 36.70 | 1,190 | 35.54 |
EGJA patients and controls.
Analyses of the association between PON1 rs854560 A>T, rs662 C>T polymorphisms and the risk of EGJA
| Genotype | Overall (1,063 cases vs. 1,677 controls) | |||
|---|---|---|---|---|
| Crude OR (95%CI) | Adjusted ORa (95%CI) | |||
| rs854560 A>T | ||||
| additive model | 1.11 (0.81–1.52) | 0.533 | 1.12 (0.81–1.54) | 0.488 |
| homozygote model | 0.79 (0.07–8.76) | 0.850 | 0.90 (0.08–9.98) | 0.933 |
| Dominant model | 1.12 (0.82–1.54) | 0.471 | 1.14 (0.83–1.56) | 0.417 |
| Recessive model | 0.80 (0.07–8.88) | 0.859 | 0.92 (0.08–10.16) | 0.945 |
| rs662 C>T | ||||
| additive model | 1.04 (0.88–1.23) | 0.624 | 1.04 (0.88–1.23) | 0.651 |
| homozygote model | 1.03 (0.80–1.32) | 0.821 | 1.01 (0.79–1.30) | 0.929 |
| Dominant model | 1.09 (0.93–1.28) | 0.282 | 1.09 (0.93–1.27) | 0.315 |
| Recessive model | 1.03 (0.82–1.30) | 0.809 | 1.01 (0.80–1.28) | 0.915 |
aAdjusted for age, sex, smoking status and alcohol use in a logistic regression model.
Stratified analyses between PON-1 rs854560 A>T polymorphism and EGJA risk by sex, age, smoking status and alcohol consumption
| Variable | Adjusted OR b (95% CI); P | |||||||
|---|---|---|---|---|---|---|---|---|
| AA | AT | TT | AA | AT | TT | AT/TT | TT vs. (AA/AT) | |
| Sex | ||||||||
| Male | 696/1222 | 49/68 | 1/1 | 1.00 | 1.17 (0.80–1.71); | 1.84 (0.12–29.48); | 1.20 (0.82–1.75); | 1.86 (0.12–29.79); |
| Female | 275/451 | 20/31 | 0/1 | 1.00 | 0.95 (0.53–1.72); | - | 0.96 (0.53–1.72); | - |
| Age | ||||||||
| < 64 | 449/777 | 32/45 | 1/1 | 1.00 | 1.19 (0.74–1.90); | 2.00 (0.12–32.03); | 1.23 (0.77–1.96); | 2.03 (0.13–32.61); |
| ≥ 64 | 522/796 | 37/54 | 0/1 | 1.00 | 1.03 (0.66–1.59); | - | 1.03 (0.67–1.59); | - |
| Smoking status | ||||||||
| Never | 700/1,239 | 53/80 | 1/2 | 1.00 | 1.13 (0.79–1.62); | 0.89 (0.08–9.84); | 1.16 (0.81–1.65); | 0.90 (0.08–10.00); |
| Ever | 271/334 | 16/19 | 0/0 | 1.00 | 1.04 (0.52–2.08); | - | 1.05 (0.52–2.10); | - |
| Alcohol consumption | ||||||||
| Never | 823/1414 | 63/89 | 1/2 | 1.00 | 1.18 (0.84–1.64); | 0.89 (0.08–9.83); | 1.20 (0.86–1.67); | 0.90 (0.08–9.98); |
| Ever | 148/159 | 6/10 | 0/0 | 1.00 | 0.58 (0.20–1.70); | - | 0.58 (0.20–1.71); | - |
a The genotyping was successful in 1063 (97.93%) EGJA cases, and 1677 (99.82%) controls for PON-1 rs854560 A>T.
b Adjusted for age, sex, smoking status and alcohol consumption (besides stratified factors accordingly) in a logistic regression model.
Stratified analyses between PON-1 rs662 C>T polymorphism and EGJA risk by sex, age, smoking status and alcohol consumption
| Variable | PON–1 rs662 C>T (case/control)a | Adjusted OR b (95% CI); | ||||||
|---|---|---|---|---|---|---|---|---|
| CC | CT | TT | CC | CT | TT | CT/ TT | TT vs. (CT/CC) | |
| Sex | ||||||||
| Male | 285/488 | 370/553 | 91/150 | 1.00 | 1.10 (0.90–1.34); | 0.98 (0.73–1.32); | 1.12 (0.93–1.35); | 0.95 (0.72–1.25); |
| Female | 123/203 | 131/223 | 41/57 | 1.00 | 0.90 (0.66–1.23); | 1.08 (0.68–1.72); | 1.01 (0.75–1.36); | 1.18 (0.76–1.83); |
| Age | ||||||||
| < 64 | 197/340 | 228/383 | 57/100 | 1.00 | 0.96 (0.76–1.23); | 0.90 (0.62–1.31); | 1.01 (0.80–1.27); | 0.94 (0.67–1.34); |
| ≥ 64 | 211/351 | 273/393 | 75/107 | 1.00 | 1.11 (0.89–1.40); | 1.11 (0.79–1.56); | 1.16 (0.93–1.45); | 1.07 (0.78–1.47); |
| Smoking status | ||||||||
| Never | 301/539 | 350/628 | 103/154 | 1.00 | 0.94 (0.78–1.14); | 1.13 (0.85–1.50); | 1.04 (0.86–1.25); | 1.20 (0.92–1.57); |
| Ever | 107/152 | 151/148 | 29/53 | 1.00 | 1.40 (0.99–1.96); | 0.69 (0.41–1.16); | 1.23 (0.89–1.70); | |
| Alcohol consumption | ||||||||
| Never | 354/627 | 422/700 | 111/178 | 1.00 | 1.01 (0.85–1.21); | 1.04 (0.80–1.37); | 1.08 (0.91–1.27); | 1.06 (0.83–1.37); |
| Ever | 54/64 | 79/76 | 21/29 | 1.00 | 1.21 (0.74–1.99); | 0.91 (0.45–1.81); | 1.13 (0.70–1.81); | 0.81 (0.43–1.53); |
a The genotyping was successful in 1063 (97.93%) EGJA cases, and 1677 (99.82%) controls for PON-1 rs662 C>T.
b Adjusted for age, sex, smoking status and alcohol consumption (besides stratified factors accordingly) in a logistic regression model.