Literature DB >> 29250410

A new monoclinic polymorph of N-(3-methyl-phen-yl)eth-oxy-carbo-thio-amide: crystal structure and Hirshfeld surface analysis.

Mukesh M Jotani1, Chien Ing Yeo2, Edward R T Tiekink2.   

Abstract

The title compound, C10H13NOS, is a second monoclinic polymorph (space group P21/c, Z' = 2) of the previously reported C2/c (Z = 1) polymorph [Tadbuppa & Tiekink (2005 ▸). Z. Kristallogr. New Cryst. Struct. 220, 395-396]. Two independent mol-ecules comprise the asymmetric unit of the new polymorph and each of these exists as a thioamide-thione tautomer. In each molecule, the central CNOS chromophore is strictly planar [r.m.s. deviations = 0.0003 and 0.0015 Å] and forms dihedral angles of 6.17 (5) and 20.78 (5)° with the N-bound 3-tolyl rings, thereby representing the major difference between the mol-ecules. The thione-S and thio-amide-N-H atoms are syn in each mol-ecule and this facilitates the formation of an eight-membered thio-amide {⋯SCNH}2 synthon between them; the dimeric aggregates are consolidated by pairwise 3-tolyl-C-H⋯S inter-actions. In the extended structure, supra-molecular layers parallel to (102) are formed via a combination of 3-tolyl-C-H⋯π(3-tol-yl) and weak π-π inter-actions [inter-centroid distance between 3-tolyl rings = 3.8535 (12) Å]. An analysis of the Hirshfeld surfaces calculated for both polymorphs reveals the near equivalence of one of the independent mol-ecules of the P21/c form to that in the C2/c form.

Entities:  

Keywords:  Hirshfeld surface analysis; carbo­thio­amide; crystal structure; hydrogen bonding

Year:  2017        PMID: 29250410      PMCID: PMC5730247          DOI: 10.1107/S2056989017016280

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Mol­ecules of the general formula ROC(=S)N(H)R′ [R = alkyl, ar­yl], O-thiocarbamates, are readily prepared from the reaction of an alcohol, ROH, with an iso­thio­cyanide derivative, R′N=C=S. Since the first report of the structure of EtOC(=S)N(H)Ph (Taylor & Tiekink, 1994 ▸), these mol­ecules have attracted the inter­est of the crystal engineering community. This inter­est arises primarily because of the propensity of these mol­ecules to form thio­amide-N—H⋯S(thione) hydrogen bonds (Ho et al., 2005 ▸; Kuan et al., 2007 ▸; Slater et al., 2016 ▸) and the ability of these mol­ecules to form co-crystals with pyridyl-like mol­ecules (Ellis et al., 2009 ▸). The neutral mol­ecules can complex bis­(phosphane)copper(I) chloride to reveal fascinating intra­molecular phenyl-C—H⋯π(quasi-chelate ring) inter­actions where the π-system is the hydrogen-bond mediated (CuCl⋯HNCS) ring (Yeo et al., 2014 ▸); inter­molecular versions of C—H⋯π(quasi-chelate ring) inter­actions are also known (Zukerman-Schpector et al., 2016 ▸). The anions form very stable compounds with phosphanegold(I) moieties to yield luminescent materials in the solid state (Ho et al., 2006 ▸) as well as potential anti-bacterial (Yeo et al., 2013 ▸) and anti-cancer (Ooi et al., 2017 ▸) agents. It was in the latter context that the title polymorph (I) was discovered. Thus, (I) was synthesized afresh for complexation to phosphanegold(I) and during characterization exhibited distinctive crystallographic properties from a previously described material, i.e. a C2/c form (Tadbuppa & Tiekink, 2005 ▸), hereafter (Ic). In the present report, the crystal and mol­ecule structures of a new monoclinic polymorph of (I), i.e. (Ip), are described along with a Hirshfeld surface analysis of both polymorphs, conducted in order to discover distinctive packing patterns.

Structural commentary

The crystallographic asymmetric unit of (Ip), Fig. 1 ▸, comprises two independent mol­ecules which are chemically indistinguishable, Table 1 ▸. The thione-S and thio­amide-N—H atoms are syn in each mol­ecule and each exists as a thio­amide–thione tautomer. The central OC(=S)N chromophores are strictly planar with the r.m.s. deviation of the four fitted atoms being 0.0003 Å [0.0015 Å for the S11-mol­ecule]. The bond lengths follow the expected trends with the C1—O1, N1 bonds being significantly shorter than the C9—O1 and C2—N1 bonds, respectively. The angles about the quaternary atom vary systematically, with those involving the thione-S1 atom being greater than the O1—C1—N1 bond angle. Of the bond angles involving the thione-S1 atom, the angle involving the O1 atom is greater by 2–3° than that formed by the sterically less encumbered N1 atom. The major difference between the key geometric parameters listed in Table 1 ▸ is found in the angles subtended at the N1 atom with the angle for the S1-mol­ecule being nearly 3° wider than that for the S1-mol­ecule. There is also a conformational difference between the two mol­ecules, readily qu­anti­fied in terms of the dihedral angles formed between the central chromophore and 3-tolyl rings of 6.17 (5) and 20.78 (5)° for the S1- and S11-mol­ecules, respectively. As seen from the overlay diagram, Fig. 2 ▸, the ethyl groups have an open conformation and overlap closely with the C1—O1—C9—C10 and C11—O11—C19—C20 torsion angles being −178.76 (17) and 177.42 (18)°, respectively.
Figure 1

The mol­ecular structures of the two independent mol­ecules comprising the asymmetric unit of (Ip) showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level.

Table 1

Selected geometric parameters (Å, °) in (Ip) and (Ic)

Parameter(Ip), S1-mol­ecule(Ip), S11-mol­eculea (Ic)
C1—S11.6768 (19)1.6752 (19)1.6720 (18)
C1—O11.321 (2)1.319 (2)1.325 (2)
C1—N11.338 (2)1.339 (2)1.337 (2)
C9—O11.457 (2)1.454 (2)1.451 (2)
C2—N11.421 (2)1.423 (2)1.426 (2)
S1—C1—O1124.23 (14)125.00 (15)124.53 (12)
S1—C1—N1122.06 (14)121.61 (15)122.11 (13)
O1—C1—N1113.71 (16)113.39 (16)113.37 (15)
C1—O1—C9118.72 (15)119.01 (15)119.29 (15)
C1—N1—C2132.48 (16)129.60 (16)130.17 (15)

Note: (a) add 10 to atom labels to tally with the numbering in Fig. 1 ▸ b.

Figure 2

Overlay diagram of the two independent mol­ecules of (Ip) (S1-mol­ecule, red image; S11-mol­ecule, green) and that of the original C2/c polymorph (blue image), (Ic). The mol­ecules have been superimposed so that the central S, O and N atoms are coincident.

Geometric parameters for the original polymorph of (I), i.e. (Ic), are also included in Table 1 ▸. A comparison of these show the values in (Ip) and (Ic) to be equal within experimental error and those of (Ic) often lying between the two independent values found for (Ip). As evidenced from Fig. 2 ▸, there is a greater twist in the mol­ecule as indicated by the dihedral angle of 30.44 (6)° formed between the central chromophore and the 3-tolyl ring. The orientation of the O-bound ethyl group is as for both mol­ecules of (Ip) with the C1—O1—C9—C10 torsion angle being −176.96 (17)°.

Supra­molecular features

The most notable feature of the mol­ecular packing of (I) is the presence of an eight-membered thio­amide synthon, {⋯SCNH}2, formed via thioamide-N—H⋯S(thione) hydrogen bonds, between the two independent mol­ecules comprising the asymmetric unit, Fig. 3 ▸ and Table 2 ▸. As shown in Fig. 3 ▸, the N—H⋯S hydrogen bonds are supported by 3-tolyl-C—H⋯S inter­actions, Table 2 ▸, with that involving the S1 atom being slightly beyond the standard distance criteria in PLATON (Spek, 2009 ▸). Globally, like mol­ecules stack along the b-axis direction. The S1-mol­ecules are connected via weak π–π inter­actions between the 3-tolyl rings with the inter-centroid distance being 3.8535 (12) Å for the symmetry operation 1 − x, 2 − y, 1 − z. The connections between the S11-mol­ecules are of the type 3-tolyl-C—H⋯π(3-tol­yl), Table 2 ▸. The columns pack into alternating layers of S1- and S11-mol­ecules parallel to [001], Fig. 4 ▸ a, and connections between them are made through the thioamide-N—H⋯S(thione) hydrogen bonds mentioned above, resulting in supra­molecular layers parallel to (102), Fig. 4 ▸ b. The layers, Fig. 4 ▸ c, stack with no directional inter­actions between them.
Figure 3

A view of the supra­molecular dimer in (Ip) sustained by thio­amide-N—H⋯S(thione) hydrogen bonds and supported by 3-tolyl-C—H⋯S(thione) inter­actions, shown as orange and green dashed lines, respectively.

Table 2

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the (C12–C17) ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯S110.87 (1)2.62 (1)3.4859 (16)174 (2)
N11—H11N⋯S10.87 (1)2.54 (1)3.3985 (15)171 (2)
C3—H3⋯S110.952.863.708 (2)150
C13—H13⋯S10.952.943.7090 (19)139
C17—H17⋯Cg1i 0.952.823.471 (2)127

Symmetry code: (i) .

Figure 4

Mol­ecular packing in (Ip): (a) a view of the unit-cell contents shown in projection down the c axis, (b) a view of the unit-cell contents shown in projection down the b axis and (c) a view of the supra­molecular layer. Mol­ecular packing in (Ic): (d) a view of the unit-cell contents shown in projection down the c axis, (e) a view of the unit-cell contents shown in projection down the b axis and (f) a view of the supra­molecular layer. The thioamide-N—H⋯S(thione), C—H⋯π and π–π inter­actions are shown as orange, purple and blue dashed lines, respectively.

The mol­ecular packing in (Ic) has not been discussed in any detail (Tadbuppa & Tiekink, 2005 ▸) and hence, is now described. The eight-membered thio­amide synthon, {⋯SCNH}2, seen in the packing of (Ip) is also found in the packing of (Ic), Table 3 ▸, with an important difference, that being the synthon has crystallographic twofold symmetry; the putative 3-tolyl-C—H⋯S inter­action is long at 2.92 Å. Globally, mol­ecules pack into columns parallel to the b axis and are sustained by 3-tolyl-C—H⋯π(3-tol­yl) inter­actions, Fig. 4 ▸ d and Table 3 ▸. Connections between columns are made by the aforementioned thioamide-N—H⋯S(thione) hydrogen bonds. The result is supra­molecular layers that stack along the c axis, Fig. 4 ▸ e. A view of the layer is shown in Fig. 4 ▸ f.
Table 3

Hydrogen-bond geometry (Å, °) for (Ic)

Cg1 is the centroid of the (C2–C7) ring.

D—H⋯AD—HH⋯AD⋯AD—H⋯A
N1—H1n⋯S1i 0.872.583.4142 (16)160
C7—H7⋯Cg1ii 0.942.913.4973 (17)122

Symmetry code: (i) −x, y,  − z; (ii)  − x, − + y,  − z.

From the images of Fig. 4 ▸, it is obvious that despite some similarities, the mol­ecular packing in polymorphs (Ip) and (Ic) are distinct. This point is highlighted in the analysis of the Hirshfeld surfaces of (Ip) and (Ic) discussed in the next section.

Analysis of the Hirshfeld surfaces of (Ip) and (Ic)

The Hirshfeld surfaces for the individual mol­ecules in (Ip), overall (Ip) and for (Ic) were calculated in accord with a recent report on a pair of polymorphs (Kuan et al., 2017 ▸). The calculations clearly reveal the similarities and differences in the inter­molecular inter­actions instrumental in the crystals of the polymorphs. The appearance of bright-red spots near the thioamide-H and thione-S atoms, diminutive red spots near the 3-tolyl-H, eth­oxy-H atoms and thione-S atoms on the Hirshfeld surfaces mapped over d norm shown in Fig. 5 ▸ for both independent mol­ecules of (Ip) as well as for polymorph (Ic) are indicative of comparable thioamide-N—H⋯S(thione) and 3-tolyl-C—H⋯S(thione) inter­actions, and short inter­atomic H⋯H contacts in their respective crystals, Table 4 ▸; values in Table 4 ▸ were obtained from an analysis employing the CrystalExplorer package (Wolff et al. 2012 ▸). As there are two independent mol­ecules in monoclinic polymorph (Ip), it exhibits a pair of the above-mentioned inter­molecular inter­actions shown with labels 1 to 4 in Fig. 5 ▸ a–c, whereas in form (Ic) they are labelled as 1 and 2 in Fig. 5 ▸ d and e. In addition to the above, the faint-red spots viewed near 3-tolyl-C14 in Fig. 5 ▸ b and eth­oxy-H20B in Fig. 5 ▸ c indicate the significance of short inter­atomic C⋯H/H⋯C contacts, Table 4 ▸, in the packing of (Ip). The donors and acceptors of inter­molecular inter­actions are also represented with blue and red regions, respectively, on the Hirshfeld surfaces mapped over electrostatic potential in Fig. 6 ▸. The new monoclinic polymorph (Ip) has distinct and a greater number of short inter­atomic contacts than for (Ic) owing, in part, to the presence of two distinct mol­ecules per asymmetric unit, Table 4 ▸. The short inter­atomic H⋯H contacts together with inter­molecular N—H⋯S and C—H⋯S inter­actions formed with the atoms of reference mol­ecules within Hirshfeld surfaces mapped over electrostatic potential for (Ip) and (Ic) are highlighted in Fig. 7 ▸.
Figure 5

Views of the Hirshfeld surfaces mapped over d norm for the (a) S1-containing mol­ecule of (Ip) in the range −0.147 to +1.345 au, (b) and (c) S11-containing mol­ecule in (Ip) in the range −0.149 to +1.274 au and (d) and (e) mol­ecule of polymorph (Ic) in the range −0.109 to 1.397 au.

Table 4

Summary of short inter­atomic contacts (Å) in (Ip) and (Ic)

ContactDistanceSymmetry operation
(Ip)  
H3⋯H142.35 x,  − y, − + z
H5⋯H9B 2.28 x,  − y,  + z
H15⋯H19A 2.31 x,  − y, − + z
H19B⋯H19B 2.082 − x, 2 − y, 1 − z
C10⋯H20C 2.87−1 + x, y, z
C14⋯H20B 2.772 − x, − + y,  − z
N1⋯H18B 2.732 − x, − + y,  − z
(Ic)  
H7⋯H9b 2.37  + x,  − y,  + z
H9a⋯H9a 2.11x, −y, −z
H10b⋯H10b 2.32  − x,  − y, −z

Note: (a) the atom numbering for the mol­ecule in (Ic) follows that for the S1-mol­ecule in (Ip).

Figure 6

Views of Hirshfeld surfaces mapped over the electrostatic potential for (a) the asymmetric unit of (Ip) in the ±0.046 au range and (b) mol­ecule of (Ic) in ±0.069 au range. The red and blue regions represent negative and positive electrostatic potentials, respectively.

Figure 7

Views of the Hirshfeld surfaces about a reference mol­ecule mapped over the electrostatic potential highlighting the short inter­atomic H⋯H contacts (red dashed lines) and inter­molecular N—H⋯S and C—H⋯ S inter­actions (black dashed lines) in (a) (Ip) and (b) (Ic).

The overall two-dimensional fingerprint plots for the S1 and S11-containing mol­ecules of (Ip), the whole asymmetric unit of (Ip) and for the polymorph (Ic) are illustrated in Fig. 8 ▸ a–d, respectively. In addition, the fingerprint plots delineated into H⋯H, S⋯H/H⋯S, C⋯H/H⋯C, C⋯C and N⋯H/H⋯N contacts (McKinnon et al., 2007 ▸) are included in Fig. 8 ▸; the relative contributions from different inter­atomic contacts to the Hirshfeld surfaces are summarized in Table 5 ▸. The nearly similar distribution of points in the fingerprint plots for S11-containing mol­ecule of (Ip) and that of (Ic) indicate similarity in their mol­ecular environments although some of the equivalent inter­atomic distances differ, Tables 2 ▸–4 ▸ ▸.
Figure 8

The full two-dimensional fingerprint plot and those delineated into H⋯H, S⋯H/H⋯S, C⋯H/H⋯C, C⋯C and N⋯H/H⋯N (left to right) contacts for (a) S1-mol­ecule of (Ip), (b) S11-mol­ecule of (Ip), (c) overall (Ip) and (d) (Ic).

Table 5

Percentage contributions of inter­atomic contacts to the Hirshfeld surfaces for the individual mol­ecules in (Ip), overall (Ip) and (Ic)

ContactPercentage contribution
 (Ip), S1-mol­ecule(Ip), S11-mol­eculeoverall (Ip)(Ic)
H⋯H57.455.561.757.0
S⋯H/H⋯S17.617.410.017.3
C⋯H/H⋯C14.018.817.817.3
C⋯C3.91.53.01.9
N⋯H/H⋯N2.62.93.02.6
C⋯O/O⋯C2.52.52.72.4
O⋯H/H⋯O1.01.21.21.1
C⋯N/N⋯C0.90.30.60.4
The fingerprint plots delineated into H⋯H contacts, Fig. 8 ▸ b and d, have needle-like tips pointing at d e + d i ∼ 2.1 Å indicating short inter­atomic H⋯H contacts, Table 4 ▸, for the S11-containing mol­ecule of (Ip) and for (Ic), both involving eth­oxy-H atoms. The other short inter­atomic contacts in both forms are characterized from the points located within the pair of short peaks in (Ip) and a single short peak in (Ic), respectively, at d e + d i < 2.4 Å, i.e. at the sum of their van der Waals radii. The involvement of eth­oxy-H atoms in short inter­atomic C⋯H/H⋯C contacts decreases the percentage contribution from H⋯H contacts to the Hirshfeld surface of the S11-containing mol­ecule whereas the contribution from equivalent contacts to the surface of the S1-containing mol­ecule of (Ip) and that of (Ic) are almost same, Table 5 ▸. The increase in percentage contribution from these contacts to the Hirshfeld surface of overall asymmetric unit of (Ip) is due to the inter­molecular N—H⋯S and C—H⋯S inter­actions between the respective atoms of S1- and S11-containing mol­ecules thereby decreasing the contribution from S⋯H/H⋯S contacts to the overall surface, Table 5 ▸. This fact is confirmed from the nearly same percentage contribution from S⋯H/H⋯S contacts to the Hirshfeld surfaces of the individual S1- and S11-containing mol­ecules of (Ip) and of the mol­ecule of the (Ic) form, Table 5 ▸, and also from pair of forceps-like tips at d e + d i ∼ 2.6 Å with the nearly same distribution of points in their respective fingerprint plots in Fig. 8 ▸. The similar distribution of points in the fingerprint plot delineated into C⋯H/H⋯C contacts for the S11-containing mol­ecule of (Ip), Fig. 8 ▸ b, and of (Ic), Fig. 8 ▸ d, indicate their involvement in the inter­molecular C—H⋯π contacts showing pairs of tips at d e + d i ∼ 2.8 and 2.9 Å, respectively. This is confirmed by the slight increase in the percentage contribution from these contacts to the Hirshfeld surface of the S11-containing mol­ecule of (Ip) cf. the S1-containing mol­ecule, Table 5 ▸. In other words, the contribution from C⋯H/H⋯C contacts to the surface of the S1-containing mol­ecule of (Ip), Table 5 ▸, is decreased due to the absence of C—H⋯π contacts involving this mol­ecule whereas the greater percentage contribution from C⋯C contacts to the Hirshfeld surface of this mol­ecule results from the presence of π–π stacking inter­actions between the symmetry-related 3-tolyl rings. This is also evident from the arrow-like distribution of points around d e = d i = 1.8 Å in the C⋯C delineated fingerprint plot shown in Fig. 8 ▸ a. The contribution of 3.0% from N⋯H/H⋯N contacts to the Hirshfeld surface of whole asymmetric unit of polymorph (Ip) indicate the presence of short inter­atomic N⋯H/H⋯N contacts between the thioamide-N1 and tolyl-H18B atoms, Table 4 ▸, although all of the delineated fingerprint plots have a similar distributions of points, Fig. 8 ▸, at least to a first approximation. The other inter­atomic contacts summarized in Table 4 ▸ make only small contributions to the Hirshfeld surfaces and have negligible contributions on the respective mol­ecular packings.

Database survey

According to a search of the Cambridge Structural Database (Version 5.38, May update; Groom et al., 2016 ▸), there are 22 monofunctional carbo­thio­amide mol­ecules related to the title compound, with (Ip) and (Ic) being the only pair of polymorphs characterized thus far. Referring to Table 6 ▸, the overwhelming majority of the 24 crystallographically characterized thio­amides feature an eight-membered thio­amide, {⋯SCNH}2, synthon. Thus, in 13 of the characterized structures, the synthon is formed about a centre of inversion, motif A. In five structures, two independent mol­ecules (Z′ = 2) comprise the asymmetric unit, as in (Ip), and these associated via the {⋯SCNH}2 synthon but with no crystallographically imposed symmetry, motif A′. There is a single example of a structure with Z′ = 3 (Taylor & Tiekink, 1994 ▸). Here, one of the independent mol­ecules self-associates about a centre of inversion, as in motif A, whereas the two remaining independent mol­ecules are connected by the {⋯SCNH}2 synthon, as found in motif A′. This is motif A′′. Two structures feature the {⋯SCNH}2 synthon located about a twofold axis of symmetry, as in (Ic), i.e. motif A′′′. The remaining three structures do not feature thioamide-N—H⋯S(thione) hydrogen bonding. In the structure of MeOC(=S)N(H)(4-C(=O)Me-phen­yl) (VI) (Ho et al., 2005 ▸), motif B, thioamide-N—H⋯O(carb­oxy) hydrogen bonding is observed, leading to a linear supra­molecular chain as shown in Fig. 9 ▸ a. This structure is noteworthy as being the only example where the conformation of the thio­amide moiety is anti rather than the normally observed syn. The final variation, motif C, is found in two structures, Table 6 ▸. The structure of (4-pyrid­yl)CH2OC(=S)N(H)phenyl (XIX) (Xiao et al., 2006 ▸) serves as an exemplar. Thus, in the crystal of (XIX), thioamide-N—H⋯N(pyrid­yl) hydrogen bonds lead to a zigzag chain as shown in Fig. 9 ▸ b. In summary, an inspection of the data in Table 6 ▸ indicates the predominance of thioamide-N—H⋯S(thione) hydrogen bonding in these carbo­thio­amides, at least in the absence of competing synthons, as seen in motifs B and C .
Table 6

Hydrogen-bonding patterns in ROC(=S)N(H)R′

Number R R ZHydrogen bondsMotifRefcodeRef.
(II)Mephen­yl1N—H⋯S A OJIHAQHo et al. (2003)
(III)Me4-NO2-phen­yl1N—H⋯S A CAZFUFHo et al. (2005)
(IV)Me4-C(=O)OMe-phen­yl1N—H⋯S A CAZGAMHo et al. (2005)
(V)Me4-Cl-phen­yl2N—H⋯S A′ CAZCEQHo et al. (2005)
(VI)Me4-C(=O)Me-phen­yl1N—H⋯O B CAZGIUHo et al. (2005)
(VII)Me2-tol­yl1N—H⋯S A TAZSIXKuan et al. (2005)
(VIII)Me4-tol­yl2N—H⋯S A′ TIBYUZHo et al. (2007)
(IX)Etphen­yl3N—H⋯S A′′ PINPILTaylor & Tiekink (1994)
(Ip)Et3-tol­yl2N—H⋯S A′ This work
(Ip)Et3-tol­yl1N—H⋯S A′′′ TAZTUKTadbuppa & Tiekink (2005)
(X)Et4-tol­yl1N—H⋯S A TIBYOTTadbuppa & Tiekink (2007a )
(XI)Et3-OMe-phen­yl1N—H⋯S A UDUPALHanif et al. (2007)
(XII)Et4-NO2-phen­yl1N—H⋯S A NENLAUBenson et al. (2006)
(XIII)Et4-Cl-phen­yl1N—H⋯S A DEYQEETadbuppa & Tiekink (2007b )
(XIV) n-Prphen­yl2N—H⋯S A′ PAWKABSudkaow et al. (2012)
(XV) i-PrPh1N—H⋯S A ADOGUWKuan et al. (2007)
(XVI) i-Pr4-tol­yl1N—H⋯S A ADOGOQKuan et al. (2007)
(XVII) i-Pr4-Cl-phen­yl1N—H⋯S A ADOHADKuan et al. (2007)
(XVIII) i-Pr4-NO2-phen­yl1N—H⋯S A MISDEYEllis et al. (2008)
(XIX)4-pyridyl­meth­ylphen­yl2N—H⋯N C IFACOIXiao et al. (2006)
(XX) i-Buphen­yl1N—H⋯S A′′′ KEQJASJian et al. (2006)
(XXI)2,4-Me2-phen­ylphen­yl1N—H⋯S A POVVOLAbraham et al. (1995)
(XXII)2,4-(OMe)2-phen­yl R 1a 1N—H⋯N C OSIZOGZhou et al. (2010)
(XXIII)Cyphen­yl2N—H⋯S A′ VEFKUOSahoo et al. (2012)

Note: (a) see Scheme 2 for the chemical diagram of (XXII).

Figure 9

Supra­molecular aggregation in related carbo­thio­amide structures: (a) linear supra­molecular chain in the crystal of MeOC(=S)N(H)(4-C(=O)Me-phen­yl) (VI) mediated by thio­amide-N—H⋯O(carb­oxy) hydrogen bonding shown as orange dashed lines and (b) zigzag chain in the crystal of (4-pyrid­yl)CH2OC(=S)N(H)phenyl mediated by thio­amide-N—H⋯N(pyrid­yl) hydrogen bonding shown as blue dashed lines.

Synthesis and crystallization

All chemicals and solvents were used as purchased without purification. To prepare (Ip), 3-tolyl iso­thio­cyanate (Merck; 2.5 mmol, 0.34 ml) was added to NaOH (Merck; 2.5 mmol, 0.10 g) in EtOH (Merck; 3 ml) and the mixture was stirred at room temperature for 2 h, followed by the addition of excess 5 M HCl solution. The resulting mixture was stirred for another 1.5 h. The final product was extracted with chloro­form (Merck; 10 ml) and left for evaporation at room temperature, yielding brown crystals after 1 week. M.p. (Krüss KSP1N melting point meter): 339–340 K. IR (Perkin Elmer Spectrum 400 FT Mid-IR/Far-IR spectrophotometer; cm−1): 3211 (s) (N—H), 1451 (s) (C—N), 1209 (s) (C=S), 1064 (s) (C—O).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 7 ▸. The carbon-bound H atoms were placed in calculated positions (C—H = 0.95–0.99 Å) and were included in the refinement in the riding-model approximation, with U iso(H) set to 1.2–1.5U eq(C). The nitro­gen-bound H atoms were located in a difference Fourier map but were refined with a distance restraint of N—H = 0.88±0.01 Å, and with U iso(H) set to 1.2U eq(N). Owing to poor agreement, one reflection, i.e. ( 1 4), was omitted from the final cycles of refinement.
Table 7

Experimental details

Crystal data
Chemical formulaC10H13NOS
M r 195.27
Crystal system, space groupMonoclinic, P21/c
Temperature (K)100
a, b, c (Å)14.3999 (5), 7.0388 (3), 19.9725 (7)
β (°)91.727 (3)
V3)2023.45 (13)
Z 8
Radiation typeMo Kα
μ (mm−1)0.28
Crystal size (mm)0.20 × 0.20 × 0.05
 
Data collection
DiffractometerAgilent SuperNova, Dual, Mo at zero, Atlas
Absorption correctionMulti-scan (CrysAlis PRO; Agilent, 2011)
T min, T max 0.662, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections15588, 4577, 3514
R int 0.040
(sin θ/λ)max−1)0.651
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.047, 0.125, 1.03
No. of reflections4577
No. of parameters245
No. of restraints2
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.72, −0.24

Computer programs: CrysAlis PRO (Agilent, 2011 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸), QMol (Gans & Shalloway, 2001 ▸), DIAMOND (Brandenburg, 2006 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989017016280/hb7715sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017016280/hb7715Isup2.hkl CCDC reference: 1585129 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H13NOSF(000) = 832
Mr = 195.27Dx = 1.282 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 14.3999 (5) ÅCell parameters from 6144 reflections
b = 7.0388 (3) Åθ = 2.4–27.5°
c = 19.9725 (7) ŵ = 0.28 mm1
β = 91.727 (3)°T = 100 K
V = 2023.45 (13) Å3Slab, colourless
Z = 80.20 × 0.20 × 0.05 mm
Agilent SuperNova, Dual, Mo at zero, Atlas diffractometer4577 independent reflections
Radiation source: SuperNova (Mo) X-ray Source3514 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.040
Detector resolution: 10.4041 pixels mm-1θmax = 27.6°, θmin = 2.5°
ω scanh = −18→18
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −9→9
Tmin = 0.662, Tmax = 1.000l = −18→25
15588 measured reflections
Refinement on F22 restraints
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.047w = 1/[σ2(Fo2) + (0.0629P)2 + 0.8006P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.125(Δ/σ)max = 0.001
S = 1.03Δρmax = 0.72 e Å3
4577 reflectionsΔρmin = −0.24 e Å3
245 parameters
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
S10.63595 (3)0.62560 (8)0.29847 (2)0.02560 (15)
O10.48087 (9)0.6728 (2)0.36508 (7)0.0205 (3)
N10.61175 (11)0.6959 (2)0.42674 (8)0.0176 (3)
H1N0.6720 (7)0.683 (3)0.4295 (11)0.021*
C10.57256 (13)0.6663 (3)0.36605 (10)0.0183 (4)
C20.57411 (12)0.7410 (3)0.48972 (9)0.0157 (4)
C30.63901 (13)0.7851 (3)0.54059 (10)0.0198 (4)
H30.70350.78280.53180.024*
C40.60988 (14)0.8320 (3)0.60359 (10)0.0224 (4)
H40.65450.86040.63820.027*
C50.51590 (14)0.8380 (3)0.61691 (10)0.0214 (4)
H50.49630.87190.66030.026*
C60.45044 (13)0.7944 (3)0.56662 (10)0.0189 (4)
C70.47948 (13)0.7455 (3)0.50316 (10)0.0185 (4)
H70.43490.71510.46880.022*
C80.34802 (13)0.8043 (3)0.58036 (11)0.0258 (5)
H8A0.31570.69890.55760.039*
H8B0.32270.92520.56370.039*
H8C0.33910.79520.62870.039*
C90.43042 (14)0.6465 (3)0.30146 (10)0.0250 (5)
H9A0.44330.51930.28270.030*
H9B0.44890.74400.26870.030*
C100.33069 (15)0.6655 (4)0.31611 (12)0.0334 (5)
H10A0.29340.64930.27470.050*
H10B0.31920.79170.33490.050*
H10C0.31350.56800.34850.050*
S110.85195 (3)0.66025 (9)0.45041 (2)0.02577 (15)
O110.99877 (9)0.7448 (2)0.37829 (6)0.0192 (3)
N110.86976 (10)0.6753 (2)0.31952 (8)0.0175 (3)
H11N0.8103 (7)0.652 (3)0.3174 (11)0.021*
C110.91055 (13)0.6951 (3)0.38026 (10)0.0185 (4)
C120.90609 (12)0.7096 (3)0.25516 (9)0.0156 (4)
C130.84323 (12)0.7751 (3)0.20604 (9)0.0179 (4)
H130.78020.79670.21650.021*
C140.87304 (13)0.8082 (3)0.14206 (9)0.0193 (4)
H140.83030.85230.10840.023*
C150.96520 (13)0.7774 (3)0.12656 (9)0.0192 (4)
H150.98540.80190.08250.023*
C161.02797 (13)0.7108 (3)0.17527 (10)0.0177 (4)
C170.99808 (13)0.6749 (3)0.23923 (9)0.0176 (4)
H171.04040.62650.27240.021*
C181.12821 (13)0.6769 (3)0.15808 (10)0.0245 (5)
H18A1.15660.58770.19040.037*
H18B1.16220.79750.15990.037*
H18C1.13080.62340.11290.037*
C191.05091 (14)0.7744 (3)0.44091 (10)0.0256 (5)
H19A1.04930.65840.46890.031*
H19B1.02380.88060.46630.031*
C201.14753 (15)0.8193 (4)0.42346 (12)0.0349 (5)
H20A1.18400.84900.46430.052*
H20B1.14770.92910.39330.052*
H20C1.17500.70960.40120.052*
U11U22U33U12U13U23
S10.0230 (3)0.0401 (3)0.0140 (3)−0.0017 (2)0.00422 (18)−0.0020 (2)
O10.0190 (7)0.0284 (8)0.0141 (7)0.0011 (6)−0.0009 (5)−0.0020 (6)
N10.0155 (7)0.0236 (9)0.0139 (8)0.0005 (7)0.0022 (6)−0.0005 (7)
C10.0200 (9)0.0174 (10)0.0176 (10)−0.0011 (8)0.0017 (7)0.0017 (8)
C20.0211 (9)0.0129 (9)0.0132 (9)0.0008 (7)0.0039 (7)0.0011 (7)
C30.0182 (9)0.0233 (11)0.0178 (10)0.0014 (8)0.0019 (7)0.0004 (8)
C40.0251 (10)0.0262 (11)0.0157 (10)−0.0002 (9)−0.0014 (8)−0.0010 (8)
C50.0279 (10)0.0234 (11)0.0133 (9)0.0026 (8)0.0052 (7)−0.0009 (8)
C60.0205 (9)0.0181 (10)0.0184 (10)−0.0003 (8)0.0052 (7)0.0035 (8)
C70.0199 (9)0.0203 (10)0.0154 (10)−0.0016 (8)0.0014 (7)0.0020 (8)
C80.0226 (10)0.0331 (12)0.0221 (11)0.0014 (9)0.0077 (8)0.0024 (9)
C90.0254 (10)0.0337 (12)0.0155 (10)−0.0020 (9)−0.0057 (8)−0.0002 (9)
C100.0267 (11)0.0404 (14)0.0329 (13)−0.0041 (10)−0.0037 (9)−0.0003 (11)
S110.0225 (3)0.0423 (3)0.0127 (3)0.0072 (2)0.00474 (18)0.0035 (2)
O110.0203 (7)0.0236 (8)0.0137 (7)0.0012 (6)−0.0003 (5)−0.0007 (6)
N110.0147 (7)0.0238 (9)0.0141 (8)0.0025 (7)0.0027 (6)0.0016 (7)
C110.0200 (9)0.0200 (10)0.0155 (9)0.0075 (8)0.0027 (7)0.0009 (8)
C120.0196 (9)0.0152 (9)0.0121 (9)−0.0005 (7)0.0031 (7)0.0003 (7)
C130.0154 (9)0.0225 (10)0.0158 (10)−0.0017 (8)0.0006 (7)−0.0010 (8)
C140.0219 (9)0.0217 (10)0.0141 (9)−0.0031 (8)−0.0032 (7)0.0010 (8)
C150.0242 (10)0.0225 (10)0.0110 (9)−0.0033 (8)0.0030 (7)0.0001 (8)
C160.0198 (9)0.0161 (9)0.0175 (10)−0.0014 (8)0.0042 (7)−0.0007 (8)
C170.0201 (9)0.0165 (9)0.0162 (10)0.0029 (8)0.0010 (7)0.0010 (8)
C180.0236 (10)0.0286 (12)0.0217 (11)0.0038 (9)0.0090 (8)0.0029 (9)
C190.0265 (10)0.0323 (12)0.0176 (10)0.0042 (9)−0.0044 (8)−0.0055 (9)
C200.0302 (12)0.0359 (14)0.0382 (14)−0.0012 (10)−0.0047 (10)−0.0008 (11)
S1—C11.6768 (19)S11—C111.6752 (19)
O1—C11.321 (2)O11—C111.319 (2)
O1—C91.457 (2)O11—C191.454 (2)
N1—C11.338 (2)N11—C111.339 (2)
N1—C21.421 (2)N11—C121.423 (2)
N1—H1N0.872 (9)N11—H11N0.872 (9)
C2—C31.394 (3)C12—C131.393 (3)
C2—C71.397 (2)C12—C171.393 (2)
C3—C41.378 (3)C13—C141.380 (3)
C3—H30.9500C13—H130.9500
C4—C51.388 (3)C14—C151.389 (3)
C4—H40.9500C14—H140.9500
C5—C61.391 (3)C15—C161.389 (3)
C5—H50.9500C15—H150.9500
C6—C71.390 (3)C16—C171.383 (3)
C6—C81.510 (3)C16—C181.513 (2)
C7—H70.9500C17—H170.9500
C8—H8A0.9800C18—H18A0.9800
C8—H8B0.9800C18—H18B0.9800
C8—H8C0.9800C18—H18C0.9800
C9—C101.480 (3)C19—C201.479 (3)
C9—H9A0.9900C19—H19A0.9900
C9—H9B0.9900C19—H19B0.9900
C10—H10A0.9800C20—H20A0.9800
C10—H10B0.9800C20—H20B0.9800
C10—H10C0.9800C20—H20C0.9800
C1—O1—C9118.72 (15)C11—O11—C19119.01 (15)
C1—N1—C2132.48 (16)C11—N11—C12129.60 (16)
C1—N1—H1N115.6 (15)C11—N11—H11N117.9 (15)
C2—N1—H1N111.9 (15)C12—N11—H11N112.0 (15)
O1—C1—N1113.71 (16)O11—C11—N11113.39 (16)
O1—C1—S1124.23 (14)O11—C11—S11125.00 (15)
N1—C1—S1122.06 (14)N11—C11—S11121.61 (15)
C3—C2—C7119.42 (17)C13—C12—C17119.95 (17)
C3—C2—N1115.45 (16)C13—C12—N11116.33 (16)
C7—C2—N1125.13 (17)C17—C12—N11123.68 (17)
C4—C3—C2120.17 (17)C14—C13—C12119.62 (17)
C4—C3—H3119.9C14—C13—H13120.2
C2—C3—H3119.9C12—C13—H13120.2
C3—C4—C5120.51 (18)C13—C14—C15120.40 (17)
C3—C4—H4119.7C13—C14—H14119.8
C5—C4—H4119.7C15—C14—H14119.8
C4—C5—C6119.90 (18)C14—C15—C16120.16 (17)
C4—C5—H5120.0C14—C15—H15119.9
C6—C5—H5120.0C16—C15—H15119.9
C7—C6—C5119.81 (17)C17—C16—C15119.61 (17)
C7—C6—C8119.97 (18)C17—C16—C18120.42 (18)
C5—C6—C8120.21 (17)C15—C16—C18119.96 (17)
C6—C7—C2120.18 (18)C16—C17—C12120.22 (18)
C6—C7—H7119.9C16—C17—H17119.9
C2—C7—H7119.9C12—C17—H17119.9
C6—C8—H8A109.5C16—C18—H18A109.5
C6—C8—H8B109.5C16—C18—H18B109.5
H8A—C8—H8B109.5H18A—C18—H18B109.5
C6—C8—H8C109.5C16—C18—H18C109.5
H8A—C8—H8C109.5H18A—C18—H18C109.5
H8B—C8—H8C109.5H18B—C18—H18C109.5
O1—C9—C10106.11 (17)O11—C19—C20107.04 (17)
O1—C9—H9A110.5O11—C19—H19A110.3
C10—C9—H9A110.5C20—C19—H19A110.3
O1—C9—H9B110.5O11—C19—H19B110.3
C10—C9—H9B110.5C20—C19—H19B110.3
H9A—C9—H9B108.7H19A—C19—H19B108.6
C9—C10—H10A109.5C19—C20—H20A109.5
C9—C10—H10B109.5C19—C20—H20B109.5
H10A—C10—H10B109.5H20A—C20—H20B109.5
C9—C10—H10C109.5C19—C20—H20C109.5
H10A—C10—H10C109.5H20A—C20—H20C109.5
H10B—C10—H10C109.5H20B—C20—H20C109.5
C9—O1—C1—N1178.80 (17)C19—O11—C11—N11178.92 (17)
C9—O1—C1—S1−1.1 (3)C19—O11—C11—S11−0.6 (3)
C2—N1—C1—O1−3.2 (3)C12—N11—C11—O11−3.8 (3)
C2—N1—C1—S1176.68 (16)C12—N11—C11—S11175.77 (16)
C1—N1—C2—C3−172.1 (2)C11—N11—C12—C13−147.0 (2)
C1—N1—C2—C77.3 (3)C11—N11—C12—C1735.4 (3)
C7—C2—C3—C40.2 (3)C17—C12—C13—C14−1.1 (3)
N1—C2—C3—C4179.66 (18)N11—C12—C13—C14−178.82 (17)
C2—C3—C4—C5−0.7 (3)C12—C13—C14—C15−0.3 (3)
C3—C4—C5—C60.7 (3)C13—C14—C15—C160.7 (3)
C4—C5—C6—C7−0.2 (3)C14—C15—C16—C170.1 (3)
C4—C5—C6—C8−178.83 (19)C14—C15—C16—C18179.80 (18)
C5—C6—C7—C2−0.3 (3)C15—C16—C17—C12−1.5 (3)
C8—C6—C7—C2178.33 (18)C18—C16—C17—C12178.84 (18)
C3—C2—C7—C60.3 (3)C13—C12—C17—C162.0 (3)
N1—C2—C7—C6−179.08 (18)N11—C12—C17—C16179.53 (17)
C1—O1—C9—C10−178.76 (17)C11—O11—C19—C20177.42 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1N···S110.87 (1)2.62 (1)3.4859 (16)174 (2)
N11—H11N···S10.87 (1)2.54 (1)3.3985 (15)171 (2)
C3—H3···S110.952.863.708 (2)150
C13—H13···S10.952.943.7090 (19)139
C17—H17···Cg1i0.952.823.471 (2)127
  11 in total

1.  Qmol: a program for molecular visualization on Windows-based PCs.

Authors:  J D Gans; D Shalloway
Journal:  J Mol Graph Model       Date:  2001       Impact factor: 2.518

2.  Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces.

Authors:  Joshua J McKinnon; Dylan Jayatilaka; Mark A Spackman
Journal:  Chem Commun (Camb)       Date:  2007-10-07       Impact factor: 6.222

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Investigation of putative arene-C-H···π(quasi-chelate ring) interactions in copper(I) crystal structures.

Authors:  Chien Ing Yeo; Siti Nadiah Abdul Halim; Seik Weng Ng; Seng Lim Tan; Julio Zukerman-Schpector; Marco A B Ferreira; Edward R T Tiekink
Journal:  Chem Commun (Camb)       Date:  2014-04-25       Impact factor: 6.222

5.  G2/M cell cycle arrest on HT-29 cancer cells and toxicity assessment of triphenylphosphanegold(I) carbonimidothioates, Ph3PAu[SC(OR)=NPh], R=Me, Et, and iPr, during zebrafish development.

Authors:  Kah Kooi Ooi; Chien Ing Yeo; Theventhiran Mahandaran; Kok Pian Ang; Abdah Md Akim; Yoke-Kqueen Cheah; Hoi-Ling Seng; Edward R T Tiekink
Journal:  J Inorg Biochem       Date:  2016-11-04       Impact factor: 4.155

6.  Luminescent phosphine gold(I) thiolates: correlation between crystal structure and photoluminescent properties in [R3PAu{SC(OMe)=NC6H4NO2-4}] (R = Et, Cy, Ph) and [(Ph2P-R-PPh2){AuSC(OMe)=NC6H4NO2-4}2] (R = CH2, (CH2)2, (CH2)3, (CH2)4, Fc).

Authors:  Soo Yei Ho; Eddie Chung-Chin Cheng; Edward R T Tiekink; Vivian Wing-Wah Yam
Journal:  Inorg Chem       Date:  2006-10-02       Impact factor: 5.165

7.  O-Propyl N-phenyl-thio-carbamate.

Authors:  Panyapon Sudkaow; Chien Ing Yeo; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19

8.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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