| Literature DB >> 29250368 |
Abstract
The title structure, 4-amino-benzoic acid 4-methyl-pyridine/4-methyl-pyridinium 4-amino-benzoate 0.58/0.42, 0.58(C6H7N·C7H7NO2)·0.42(C6H8N+·C7H6NO2-), has been redetermined from the data published by Kumar et al. (2015 ▸). Acta Cryst. E71, o125-o126. The improvement of the present redetermination consists in the introduction of disorder of the methyl group over two positions as well as in the correction of the positional parameters of the hydrogen atoms that are involved in the O-H⋯N or N-H⋯O hydrogen bonds. After the correction, the hydroxyl hydrogen atom turned out to be disordered over two positions about the centre of the O⋯N bond, which is relatively long [2.642 (2) Å], while the H atoms of the primary amine group account more realistically for the hydrogen-bond pattern after the removal of the positional constraints. All the O-H⋯N or N-H⋯O hydrogen bonds which are present in the title structure are of moderate strength.Entities:
Keywords: crystal structure; hydrogen bonding; redetermination; refinement constraints; symmetric hydrogen bonds
Year: 2017 PMID: 29250368 PMCID: PMC5730305 DOI: 10.1107/S2056989017013226
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1View of the constituent molecules of the title structure (top: the original determination (Kumar et al., 2015 ▸); bottom: present redetermination). Displacement ellipsoids are depicted at the 50% probability level.
Figure 2A section of the difference electron-density map for the redetermined title structure without the atoms H1x and H1y. A build-up of the electron density between the atom O1 (red) and N2iii (blue) [symmetry codes: (iii) x + 1, y, z + 1] is shown; the larger and the smaller peaks correspond to the electron density of 0.12 and 0.11 e A−3, respectively. These peaks were assigned to the respective positions of H1x and H1y iii. The positive and negative electron densities are indicated by continuous and dashed lines, respectively. The increment of the electron density between neighbouring contours is 0.01 e Å−3. Atom C7 is indicated by a gray circle.
Figure 3A section of the difference electron-density map for the redetermined title structure without the methyl H atoms. The positions of both methyl-hydrogen triplets are indicated by yellow circles of a different hue. The positive and negative electron densities are indicated by continuous and dashed lines, respectively. The increment of electron density between the neighbouring contours is 0.01 e Å−3.
Hydrogen bonds (Å, °) in the redetermined structure as well as in the determintion by Kumar et al. (2015 ▸). Some of the atoms in the original article were transformed
| Bond |
| H⋯ |
|
|
|---|---|---|---|---|
| This determination: | ||||
| N1—H1 | 0.88 (2) | 2.22 (3) | 3.051 (3) | 158 (3) |
| N1—H1 | 0.99 (3) | 2.04 (3) | 3.028 (3) | 179 (2) |
| O1—H1 | 1.0154 (14) | 1.6303 (18) | 2.642 (2) | 173.65 (11) |
| N2—H1 | 1.0719 (18) | 1.5740 (14) | 2.642 (2) | 173.55 (12) |
| Determination by | ||||
| Kumar | ||||
| N1—H1 | 0.86 | 2.32 | 3.049 (3) | 142 |
| N1—H1 | 0.86 | 2.17 | 3.031 (3) | 174 |
| O1—H1⋯N2ii | 0.84 (1) | 1.81 (1) | 2.644 (3) | 177 (4) |
Symmetry codes: (i) x − 1, y, z − 1; (ii) x − 1, −y, z − ; (iii) x + 1, y, z + 1.
Figure 4A section of the title structure. Symmetry codes (i): −x + 1, y, z − 1; (ii): −x + 1, −y, z − ; (iii): x + 1, y, z + 1; (iv): −x + 2, −y, z − (v): x − 2, y, z − 1. Applied colours for the atoms: grey – C and H, blue – N, O – red; applied colours for the bonds: black – covalent bonds, dashed orange – hydrogen bonds.
Experimental details
| Crystal data | |
| Chemical formula | 0.58(C6H7N·C7H7NO2)·0.42(C6H8N+·C7H6NO2 −) |
|
| 230.3 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 295 |
|
| 7.5970 (7), 11.6665 (12), 7.6754 (8) |
| β (°) | 114.200 (3) |
|
| 620.49 (11) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.28 × 0.24 × 0.20 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.977, 0.983 |
| No. of measured, independent and observed [ | 10064, 2144, 1330 |
|
| 0.030 |
| (sin θ/λ)max (Å−1) | 0.632 |
| Refinement | |
|
| 0.031, 0.067, 1.29 |
| No. of reflections | 2144 |
| No. of parameters | 162 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.08, −0.08 |
| Absolute structure | 826 of Friedel pairs used in the refinement |
Computer programs: APEX2 and SAINT (Bruker, 2000 ▸), SHELXS97 (Sheldrick, 2008 ▸), JANA2006 (Petříček et al., 2014 ▸), PLATON (Spek, 2009 ▸) and DIAMOND (Brandenburg & Putz, 2005 ▸).
| 0.58(C6H7N·C7H7NO2)·0.42(C6H8N+·C7H6NO2−) | |
| Monoclinic, | Mo |
| Hall symbol: P -2yc | Cell parameters from 2749 reflections |
| θ = 3.4–21.8° | |
| µ = 0.09 mm−1 | |
| β = 114.200 (3)° | Block, colourless |
| 0.28 × 0.24 × 0.20 mm | |
| Bruker Kappa APEXII CCD diffractometer | 2144 independent reflections |
| Radiation source: fine-focus sealed tube | 1330 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 26.7°, θmin = 3.4° |
| Absorption correction: multi-scan ( | |
| 10064 measured reflections |
| Refinement on | 3 constraints |
| H atoms treated by a mixture of independent and constrained refinement | |
| Weighting scheme based on measured s.u.'s | |
| (Δ/σ)max = 0.035 | |
| 2144 reflections | Δρmax = 0.08 e Å−3 |
| 162 parameters | Δρmin = −0.08 e Å−3 |
| 0 restraints | Absolute structure: 826 of Friedel pairs used in the refinement |
| Occ. (<1) | |||||
| C1 | 0.3688 (3) | 0.10370 (17) | 0.7142 (3) | 0.0567 (10) | |
| C2 | 0.4435 (3) | 0.20303 (17) | 0.6720 (3) | 0.0579 (10) | |
| H2 | 0.367077 | 0.247318 | 0.567618 | 0.0694* | |
| C3 | 0.6269 (3) | 0.23627 (16) | 0.7816 (3) | 0.0548 (10) | |
| H3 | 0.673456 | 0.303544 | 0.750858 | 0.0658* | |
| C4 | 0.7464 (3) | 0.17333 (18) | 0.9371 (3) | 0.0495 (8) | |
| C5 | 0.6731 (3) | 0.07378 (17) | 0.9790 (3) | 0.0590 (11) | |
| H5 | 0.75078 | 0.029552 | 1.08292 | 0.0708* | |
| C6 | 0.4893 (3) | 0.03939 (18) | 0.8710 (3) | 0.0619 (11) | |
| H6 | 0.443281 | −0.027955 | 0.902126 | 0.0743* | |
| C7 | 0.9412 (3) | 0.21074 (18) | 1.0589 (3) | 0.0586 (11) | |
| C8 | 0.4371 (3) | 0.45466 (19) | 0.3179 (3) | 0.0722 (12) | |
| H8 | 0.357015 | 0.51507 | 0.317318 | 0.0867* | |
| C9 | 0.6296 (3) | 0.4649 (2) | 0.4249 (3) | 0.0692 (12) | |
| H9 | 0.677992 | 0.53111 | 0.495943 | 0.083* | |
| C10 | 0.7528 (3) | 0.3785 (2) | 0.4289 (3) | 0.0634 (11) | |
| C11 | 0.6709 (3) | 0.2837 (2) | 0.3229 (3) | 0.0713 (12) | |
| H11 | 0.748112 | 0.222191 | 0.321632 | 0.0856* | |
| C12 | 0.4763 (4) | 0.2786 (2) | 0.2188 (3) | 0.0758 (13) | |
| H12 | 0.424395 | 0.212877 | 0.147656 | 0.0909* | |
| C13 | 0.9662 (3) | 0.3868 (2) | 0.5459 (4) | 0.0953 (14) | |
| H13a | 1.011616 | 0.460296 | 0.525995 | 0.143* | 0.5 |
| H13b | 1.030779 | 0.32749 | 0.507907 | 0.143* | 0.5 |
| H13c | 0.99267 | 0.377834 | 0.678664 | 0.143* | 0.5 |
| N1 | 0.1826 (3) | 0.0714 (2) | 0.6077 (3) | 0.0816 (11) | |
| H1b | 0.139 (4) | −0.003 (2) | 0.635 (4) | 0.0979* | |
| H1a | 0.119 (4) | 0.104 (2) | 0.496 (4) | 0.0979* | |
| N2 | 0.3581 (3) | 0.36282 (17) | 0.2143 (3) | 0.0708 (9) | |
| O1 | 0.9925 (2) | 0.30981 (13) | 1.0111 (2) | 0.0797 (7) | |
| O2 | 1.0511 (2) | 0.15736 (13) | 1.1982 (2) | 0.0771 (7) | |
| H1x | 1.131103 | 0.335566 | 1.084979 | 0.131 (10)* | 0.58 (6) |
| H1y | 0.211109 | 0.33646 | 0.138026 | 0.131 (10)* | 0.42 (6) |
| H13d | 1.03067 | 0.399497 | 0.463082 | 0.143* | 0.5 |
| H13e | 0.992562 | 0.449433 | 0.634092 | 0.143* | 0.5 |
| H13f | 1.011833 | 0.316689 | 0.615392 | 0.143* | 0.5 |
| C1 | 0.0553 (15) | 0.0586 (14) | 0.0525 (14) | −0.0083 (13) | 0.0185 (12) | −0.0083 (13) |
| C2 | 0.0593 (15) | 0.0554 (13) | 0.0484 (14) | 0.0003 (11) | 0.0115 (12) | 0.0089 (11) |
| C3 | 0.0577 (14) | 0.0525 (12) | 0.0501 (14) | −0.0059 (11) | 0.0179 (12) | 0.0043 (11) |
| C4 | 0.0520 (12) | 0.0483 (11) | 0.0419 (12) | 0.0043 (11) | 0.0128 (10) | 0.0032 (11) |
| C5 | 0.0675 (16) | 0.0517 (14) | 0.0475 (15) | 0.0003 (12) | 0.0131 (12) | 0.0050 (11) |
| C6 | 0.0771 (18) | 0.0505 (12) | 0.0573 (15) | −0.0072 (12) | 0.0269 (13) | 0.0066 (12) |
| C7 | 0.0565 (16) | 0.0533 (13) | 0.0587 (15) | 0.0028 (12) | 0.0161 (13) | −0.0033 (13) |
| C8 | 0.0642 (16) | 0.0608 (15) | 0.0795 (18) | 0.0030 (13) | 0.0172 (14) | 0.0014 (14) |
| C9 | 0.0671 (17) | 0.0606 (15) | 0.0677 (18) | −0.0086 (13) | 0.0153 (13) | −0.0042 (12) |
| C10 | 0.0580 (16) | 0.0743 (16) | 0.0565 (15) | −0.0046 (14) | 0.0219 (12) | 0.0051 (14) |
| C11 | 0.0654 (16) | 0.0736 (16) | 0.0778 (19) | 0.0022 (13) | 0.0324 (15) | −0.0068 (14) |
| C12 | 0.0759 (18) | 0.0752 (17) | 0.0718 (19) | −0.0131 (15) | 0.0257 (15) | −0.0155 (14) |
| C13 | 0.0599 (16) | 0.108 (2) | 0.102 (2) | −0.0065 (14) | 0.0170 (14) | 0.0027 (19) |
| N1 | 0.0661 (15) | 0.0866 (17) | 0.0751 (16) | −0.0152 (12) | 0.0116 (13) | 0.0095 (13) |
| N2 | 0.0563 (12) | 0.0707 (13) | 0.0739 (14) | −0.0070 (12) | 0.0150 (10) | −0.0029 (11) |
| O1 | 0.0619 (10) | 0.0671 (10) | 0.0852 (12) | −0.0117 (8) | 0.0050 (8) | 0.0129 (9) |
| O2 | 0.0678 (11) | 0.0708 (9) | 0.0650 (11) | 0.0061 (8) | −0.0011 (9) | 0.0100 (8) |
| C1—C2 | 1.386 (3) | C10—C13 | 1.500 (3) |
| C1—C6 | 1.395 (3) | C11—H11 | 0.9299 |
| C1—N1 | 1.365 (3) | C11—C12 | 1.363 (3) |
| C2—H2 | 0.93 | C12—H12 | 0.93 |
| C2—C3 | 1.356 (3) | C12—N2 | 1.322 (3) |
| C3—H3 | 0.93 | C13—H13a | 0.96 |
| C3—C4 | 1.378 (3) | C13—H13b | 0.9599 |
| C4—C5 | 1.382 (3) | C13—H13c | 0.96 |
| C4—C7 | 1.456 (3) | C13—H13d | 0.96 |
| C5—H5 | 0.93 | C13—H13e | 0.96 |
| C5—C6 | 1.360 (3) | C13—H13f | 0.96 |
| C6—H6 | 0.93 | N1—H1b | 0.99 (3) |
| C7—O1 | 1.319 (3) | N1—H1a | 0.88 (2) |
| C7—O2 | 1.223 (2) | H1b—H1a | 1.61 (4) |
| C8—H8 | 0.9301 | N2—H1xi | 1.6303 (18) |
| C8—C9 | 1.357 (3) | N2—H1y | 1.0719 (18) |
| C8—N2 | 1.322 (3) | O1—H1x | 1.0154 (14) |
| C9—H9 | 0.93 | O1—H1yii | 1.5740 (14) |
| C9—C10 | 1.367 (3) | H1x—H1yii | 0.5766 (1) |
| C10—C11 | 1.362 (3) | ||
| C2—C1—C6 | 117.69 (18) | C10—C11—H11 | 119.8 |
| C2—C1—N1 | 120.94 (18) | C10—C11—C12 | 120.4 (2) |
| C6—C1—N1 | 121.4 (2) | H11—C11—C12 | 119.79 |
| C1—C2—H2 | 119.68 | C11—C12—H12 | 118.53 |
| C1—C2—C3 | 120.63 (17) | C11—C12—N2 | 123.0 (2) |
| H2—C2—C3 | 119.69 | H12—C12—N2 | 118.52 |
| C2—C3—H3 | 119.02 | C10—C13—H13a | 109.47 |
| C2—C3—C4 | 122.0 (2) | C10—C13—H13b | 109.47 |
| H3—C3—C4 | 119.02 | C10—C13—H13c | 109.47 |
| C3—C4—C5 | 117.65 (18) | C10—C13—H13d | 109.47 |
| C3—C4—C7 | 122.1 (2) | C10—C13—H13e | 109.47 |
| C5—C4—C7 | 120.19 (17) | C10—C13—H13f | 109.47 |
| C4—C5—H5 | 119.43 | H13a—C13—H13b | 109.48 |
| C4—C5—C6 | 121.16 (18) | H13a—C13—H13c | 109.47 |
| H5—C5—C6 | 119.42 | H13b—C13—H13c | 109.47 |
| C1—C6—C5 | 120.9 (2) | H13d—C13—H13e | 109.48 |
| C1—C6—H6 | 119.54 | H13d—C13—H13f | 109.47 |
| C5—C6—H6 | 119.54 | H13e—C13—H13f | 109.47 |
| C4—C7—O1 | 114.98 (17) | C1—N1—H1b | 118.1 (13) |
| C4—C7—O2 | 124.0 (2) | C1—N1—H1a | 119.1 (18) |
| O1—C7—O2 | 121.05 (18) | H1b—N1—H1a | 120 (2) |
| H8—C8—C9 | 118.46 | C8—N2—C12 | 116.79 (19) |
| H8—C8—N2 | 118.46 | C8—N2—H1xi | 129.06 (19) |
| C9—C8—N2 | 123.1 (2) | C8—N2—H1y | 132.5 (2) |
| C8—C9—H9 | 119.78 | C12—N2—H1xi | 114.12 (16) |
| C8—C9—C10 | 120.4 (2) | C12—N2—H1y | 110.21 (19) |
| H9—C9—C10 | 119.79 | C7—O1—H1x | 117.45 (14) |
| C9—C10—C11 | 116.3 (2) | N2ii—H1x—O1 | 173.65 (11) |
| C9—C10—C13 | 121.8 (2) | N2—H1y—O1i | 173.55 (12) |
| C11—C10—C13 | 121.8 (2) |
| H··· | ||||
| N1—H1 | 0.99 (3) | 2.04 (3) | 3.028 (3) | 179 (2) |
| N1—H1 | 0.88 (2) | 2.22 (3) | 3.051 (3) | 158 (3) |
| O1—H1 | 1.0154 (14) | 1.6303 (18) | 2.642 (2) | 173.65 (11) |
| N2—H1 | 1.0719 (18) | 1.5740 (14) | 2.642 (2) | 173.55 (12) |