| Literature DB >> 29250352 |
Syuto Tanaka1, Hyuma Masu2, Yuji Sasanuma1.
Abstract
The title compounds, C16H14O2S2 and C16H14O3S, which are monomeric models (models D and E) for a polythio-noester and a poly(ester-co-thio-noester), respectively, crystallize in the space group P21/c and are isostructural with each other. The mol-ecule in each crystal is located on an inversion centre and has an all-trans structure. The asymmetric unit comprises one half-mol-ecule. In the crystal, there are inter-molecular C⋯S contacts [3.391 (3) and 3.308 (3) Å for models D and E, respectively] and C-H⋯π inter-actions, which form a layer structure parallel to the bc plane. The carbonyl and thio-carbonyl groups of the model E compound are each disordered over two equivalent sites about the inversion centre with equal occupancies.Entities:
Keywords: C—H⋯π interaction; C⋯S close contact; all-trans structure; crystal structure; thionoester
Year: 2017 PMID: 29250352 PMCID: PMC5730289 DOI: 10.1107/S2056989017012701
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of model D, showing atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. The unlabelled atoms are related to the labelled atoms by inversion symmetry (symmetry code: 2 − x, 2 − y, 2 − z,). H atoms are represented by spheres of arbitrary size.
Figure 2The molecular structure of model E, showing atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. The unlabelled atoms are related to the labelled atoms by inversion symmetry (symmetry code: 2 − x, 2 − y, 2 − z,). H atoms are represented by spheres of arbitrary size.
C—H⋯π interaction geometry (Å, °) for model D
Cg1 is the centroid of the C2–C7 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3⋯ | 0.95 | 2.92 | 3.721 (3) | 143 |
Symmetry code: (i) x, −y + , z − .
C—H⋯π interaction geometry (Å, °) for model E
Cg1 is the centroid of the C2–C7 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3⋯ | 0.95 | 2.89 | 3.641 (3) | 137 |
Symmetry code: (i) x, −y + , z − .
Figure 3A packing diagram of model D, showing intermolecular C⋯S contacts (red dotted lines) and C—H⋯π interactions (blue dotted lines).
Figure 4A packing diagram of model E, showing intermolecular C⋯S contacts (red dotted lines) and C—H⋯π interactions (blue dotted lines).
Experimental details
| model | model | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C16H14O2S2 | C16H14O3S |
|
| 302.39 | 286.33 |
| Crystal system, space group | Monoclinic, | Monoclinic, |
| Temperature (K) | 173 | 173 |
|
| 8.829 (5), 11.680 (7), 7.727 (5) | 8.800 (5), 11.403 (6), 7.506 (4) |
| β (°) | 113.475 (10) | 113.831 (6) |
|
| 730.9 (8) | 689.0 (6) |
|
| 2 | 2 |
| Radiation type | Mo | Mo |
| μ (mm−1) | 0.36 | 0.24 |
| Crystal size (mm) | 0.40 × 0.40 × 0.20 | 0.40 × 0.40 × 0.10 |
| Data collection | ||
| Diffractometer | Bruker APEXII CCD area detector | Bruker APEXII CCD area detector |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.88, 0.93 | 0.84, 0.98 |
| No. of measured, independent and observed [ | 4017, 1617, 1487 | 3265, 1523, 1335 |
|
| 0.014 | 0.015 |
| (sin θ/λ)max (Å−1) | 0.648 | 0.653 |
| Refinement | ||
|
| 0.029, 0.080, 1.03 | 0.038, 0.090, 1.08 |
| No. of reflections | 1617 | 1523 |
| No. of parameters | 91 | 100 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.39, −0.20 | 0.19, −0.16 |
Computer programs: APEX2, SAINT, XSHEL and XCIF (Bruker, 2012 ▸) SHELXS97 (Sheldrick, 2008 ▸) and SHELXL2013 (Sheldrick, 2015 ▸).
| C16H14O2S2 | |
| Monoclinic, | Mo |
| Cell parameters from 2339 reflections | |
| θ = 2.5–27.6° | |
| µ = 0.36 mm−1 | |
| β = 113.475 (10)° | |
| Prismatic, yellow | |
| 0.40 × 0.40 × 0.20 mm |
| Bruker APEXII CCD area detector diffractometer | 1617 independent reflections |
| Radiation source: fine-focus sealed tube | 1487 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3333 pixels mm-1 | θmax = 27.4°, θmin = 2.5° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 4017 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 1617 reflections | Δρmax = 0.39 e Å−3 |
| 91 parameters | Δρmin = −0.20 e Å−3 |
| Experimental. SADABS (Sheldrick 1996) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.70662 (15) | 0.86862 (11) | 0.98706 (17) | 0.0209 (3) | |
| C2 | 0.52641 (15) | 0.87852 (10) | 0.86705 (17) | 0.0205 (3) | |
| C3 | 0.41444 (16) | 0.80285 (12) | 0.89460 (19) | 0.0271 (3) | |
| H3 | 0.4532 | 0.7468 | 0.9916 | 0.033* | |
| C4 | 0.24591 (17) | 0.80973 (13) | 0.7796 (2) | 0.0312 (3) | |
| H4 | 0.1705 | 0.7586 | 0.7991 | 0.037* | |
| C5 | 0.18837 (16) | 0.89124 (13) | 0.6367 (2) | 0.0309 (3) | |
| H5 | 0.0741 | 0.8947 | 0.5572 | 0.037* | |
| C6 | 0.29824 (17) | 0.96779 (13) | 0.6101 (2) | 0.0316 (3) | |
| H6 | 0.2585 | 1.024 | 0.5136 | 0.038* | |
| C7 | 0.46690 (16) | 0.96209 (11) | 0.72503 (19) | 0.0259 (3) | |
| H7 | 0.5413 | 1.0148 | 0.707 | 0.031* | |
| C8 | 0.97120 (15) | 0.94978 (12) | 1.04144 (19) | 0.0267 (3) | |
| H8A | 1.0184 | 0.8771 | 1.0194 | 0.032* | |
| H8B | 1.0041 | 0.9599 | 1.1788 | 0.032* | |
| O1 | 0.79324 (11) | 0.95006 (8) | 0.94319 (13) | 0.0252 (2) | |
| S1 | 0.79118 (4) | 0.77062 (3) | 1.15081 (5) | 0.02945 (13) |
| C1 | 0.0204 (6) | 0.0227 (6) | 0.0205 (6) | −0.0032 (5) | 0.0091 (5) | −0.0036 (5) |
| C2 | 0.0189 (6) | 0.0224 (6) | 0.0205 (6) | −0.0013 (5) | 0.0080 (5) | −0.0036 (5) |
| C3 | 0.0232 (6) | 0.0300 (7) | 0.0265 (7) | −0.0040 (5) | 0.0081 (5) | 0.0023 (5) |
| C4 | 0.0221 (6) | 0.0373 (8) | 0.0334 (7) | −0.0072 (6) | 0.0103 (6) | −0.0024 (6) |
| C5 | 0.0191 (6) | 0.0376 (8) | 0.0318 (7) | 0.0020 (5) | 0.0057 (5) | −0.0050 (6) |
| C6 | 0.0274 (7) | 0.0315 (7) | 0.0314 (7) | 0.0051 (6) | 0.0068 (6) | 0.0049 (6) |
| C7 | 0.0244 (7) | 0.0244 (6) | 0.0283 (7) | −0.0010 (5) | 0.0099 (5) | 0.0014 (5) |
| C8 | 0.0170 (6) | 0.0314 (7) | 0.0281 (6) | −0.0041 (5) | 0.0051 (5) | 0.0030 (5) |
| O1 | 0.0174 (4) | 0.0269 (5) | 0.0282 (5) | −0.0042 (3) | 0.0057 (4) | 0.0037 (4) |
| S1 | 0.02236 (19) | 0.0332 (2) | 0.0302 (2) | −0.00007 (13) | 0.00763 (14) | 0.00936 (13) |
| C1—O1 | 1.3458 (16) | C5—C6 | 1.393 (2) |
| C1—C2 | 1.4931 (18) | C5—H5 | 0.95 |
| C1—S1 | 1.6481 (14) | C6—C7 | 1.399 (2) |
| C2—C3 | 1.4042 (19) | C6—H6 | 0.95 |
| C2—C7 | 1.4049 (19) | C7—H7 | 0.95 |
| C3—C4 | 1.399 (2) | C8—O1 | 1.4474 (17) |
| C3—H3 | 0.95 | C8—C8i | 1.518 (3) |
| C4—C5 | 1.392 (2) | C8—H8A | 0.99 |
| C4—H4 | 0.95 | C8—H8B | 0.99 |
| O1—C1—C2 | 111.15 (11) | C6—C5—H5 | 120.0 |
| O1—C1—S1 | 123.72 (10) | C5—C6—C7 | 120.22 (13) |
| C2—C1—S1 | 125.13 (9) | C5—C6—H6 | 119.9 |
| C3—C2—C7 | 119.27 (12) | C7—C6—H6 | 119.9 |
| C3—C2—C1 | 119.84 (12) | C6—C7—C2 | 120.09 (12) |
| C7—C2—C1 | 120.89 (11) | C6—C7—H7 | 120.0 |
| C4—C3—C2 | 120.17 (13) | C2—C7—H7 | 120.0 |
| C4—C3—H3 | 119.9 | O1—C8—C8i | 104.66 (13) |
| C2—C3—H3 | 119.9 | O1—C8—H8A | 110.8 |
| C5—C4—C3 | 120.21 (13) | C8i—C8—H8A | 110.8 |
| C5—C4—H4 | 119.9 | O1—C8—H8B | 110.8 |
| C3—C4—H4 | 119.9 | C8i—C8—H8B | 110.8 |
| C4—C5—C6 | 120.02 (13) | H8A—C8—H8B | 108.9 |
| C4—C5—H5 | 120.0 | C1—O1—C8 | 118.26 (10) |
| C16H14O3S | |
| Monoclinic, | Mo |
| Cell parameters from 1991 reflections | |
| θ = 2.5–27.6° | |
| µ = 0.24 mm−1 | |
| β = 113.831 (6)° | |
| Prismatic, yellow | |
| 0.40 × 0.40 × 0.10 mm |
| Bruker APEXII CCD area detector diffractometer | 1523 independent reflections |
| Radiation source: fine-focus sealed tube | 1335 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3333 pixels mm-1 | θmax = 27.7°, θmin = 2.5° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 3265 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.002 | |
| 1523 reflections | Δρmax = 0.19 e Å−3 |
| 100 parameters | Δρmin = −0.16 e Å−3 |
| Experimental. SADABS (Sheldrick 1996) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| S1 | 0.78695 (19) | 0.76827 (18) | 1.1323 (3) | 0.0410 (3) | 0.5 |
| O2 | 0.7837 (8) | 0.7828 (6) | 1.0959 (10) | 0.087 (3) | 0.5 |
| O1 | 0.79258 (12) | 0.94978 (9) | 0.93503 (15) | 0.0404 (3) | |
| C1 | 0.70747 (18) | 0.86474 (13) | 0.9769 (2) | 0.0372 (3) | |
| C2 | 0.52662 (17) | 0.87657 (12) | 0.86227 (19) | 0.0338 (3) | |
| C3 | 0.4186 (2) | 0.79742 (14) | 0.8908 (2) | 0.0428 (4) | |
| H3 | 0.461 | 0.7372 | 0.9857 | 0.051* | |
| C4 | 0.2497 (2) | 0.80604 (15) | 0.7815 (2) | 0.0486 (4) | |
| H4 | 0.1762 | 0.7516 | 0.8014 | 0.058* | |
| C5 | 0.1873 (2) | 0.89288 (16) | 0.6442 (3) | 0.0492 (4) | |
| H5 | 0.0711 | 0.8978 | 0.5681 | 0.059* | |
| C6 | 0.2934 (2) | 0.97304 (15) | 0.6168 (2) | 0.0470 (4) | |
| H6 | 0.2498 | 1.0336 | 0.5229 | 0.056* | |
| C7 | 0.46254 (18) | 0.96570 (12) | 0.7252 (2) | 0.0381 (3) | |
| H7 | 0.5351 | 1.0213 | 0.7064 | 0.046* | |
| C8 | 0.97020 (18) | 0.94635 (14) | 1.0342 (2) | 0.0440 (4) | |
| H8A | 1.0153 | 0.8744 | 0.9999 | 0.053* | |
| H8B | 1.0047 | 0.9485 | 1.1771 | 0.053* |
| S1 | 0.0345 (5) | 0.0398 (5) | 0.0452 (6) | 0.0040 (4) | 0.0125 (4) | 0.0086 (5) |
| O2 | 0.094 (4) | 0.073 (4) | 0.086 (5) | −0.007 (3) | 0.028 (3) | 0.007 (3) |
| O1 | 0.0368 (5) | 0.0394 (6) | 0.0392 (6) | −0.0059 (4) | 0.0093 (4) | 0.0043 (4) |
| C1 | 0.0457 (8) | 0.0330 (7) | 0.0324 (8) | −0.0042 (6) | 0.0153 (6) | −0.0013 (6) |
| C2 | 0.0419 (8) | 0.0332 (7) | 0.0270 (7) | −0.0048 (6) | 0.0144 (6) | −0.0058 (5) |
| C3 | 0.0536 (9) | 0.0417 (8) | 0.0333 (8) | −0.0113 (7) | 0.0176 (7) | −0.0028 (6) |
| C4 | 0.0475 (9) | 0.0563 (10) | 0.0462 (10) | −0.0191 (8) | 0.0233 (7) | −0.0124 (8) |
| C5 | 0.0380 (8) | 0.0592 (10) | 0.0489 (10) | −0.0037 (7) | 0.0159 (7) | −0.0100 (8) |
| C6 | 0.0445 (8) | 0.0470 (9) | 0.0464 (10) | 0.0036 (7) | 0.0151 (7) | 0.0021 (7) |
| C7 | 0.0427 (8) | 0.0343 (7) | 0.0380 (8) | −0.0027 (6) | 0.0171 (6) | −0.0010 (6) |
| C8 | 0.0365 (8) | 0.0462 (9) | 0.0437 (9) | −0.0044 (7) | 0.0103 (6) | 0.0033 (7) |
| S1—C1 | 1.549 (3) | C4—H4 | 0.95 |
| O2—C1 | 1.279 (6) | C5—C6 | 1.380 (2) |
| O1—C1 | 1.3381 (18) | C5—H5 | 0.95 |
| O1—C8 | 1.4349 (19) | C6—C7 | 1.380 (2) |
| C1—C2 | 1.478 (2) | C6—H6 | 0.95 |
| C2—C3 | 1.389 (2) | C7—H7 | 0.95 |
| C2—C7 | 1.393 (2) | C8—C8i | 1.501 (3) |
| C3—C4 | 1.381 (2) | C8—H8A | 0.99 |
| C3—H3 | 0.95 | C8—H8B | 0.99 |
| C4—C5 | 1.374 (3) | ||
| C1—O1—C8 | 117.01 (12) | C4—C5—C6 | 119.98 (15) |
| O2—C1—O1 | 120.5 (3) | C4—C5—H5 | 120.0 |
| O2—C1—C2 | 127.6 (3) | C6—C5—H5 | 120.0 |
| O1—C1—C2 | 111.73 (13) | C5—C6—C7 | 120.36 (16) |
| O1—C1—S1 | 124.48 (13) | C5—C6—H6 | 119.8 |
| C2—C1—S1 | 123.75 (13) | C7—C6—H6 | 119.8 |
| C3—C2—C7 | 119.33 (14) | C6—C7—C2 | 119.85 (14) |
| C3—C2—C1 | 119.61 (14) | C6—C7—H7 | 120.1 |
| C7—C2—C1 | 121.06 (13) | C2—C7—H7 | 120.1 |
| C4—C3—C2 | 120.12 (15) | O1—C8—C8i | 104.96 (15) |
| C4—C3—H3 | 119.9 | O1—C8—H8A | 110.8 |
| C2—C3—H3 | 119.9 | C8i—C8—H8A | 110.8 |
| C5—C4—C3 | 120.33 (15) | O1—C8—H8B | 110.8 |
| C5—C4—H4 | 119.8 | C8i—C8—H8B | 110.8 |
| C3—C4—H4 | 119.8 | H8A—C8—H8B | 108.8 |