| Literature DB >> 29250307 |
Romain Duroux1,2, Antonella Ciancetta1, Philip Mannes1, Jinha Yu1, Shireesha Boyapati1,3, Elizabeth Gizewski4, Said Yous2, Francisco Ciruela5, John A Auchampach4, Zhan-Guo Gao1, Kenneth A Jacobson1.
Abstract
A pyrazolo[4,3-e][1,2,4]triazolo[1,5-c]pyrimidin-5-amine antagonist of the A2A adenosine receptor (AR) was functionalized as amine congeners, fluorescent conjugates and a sulfonate, and the A2AAR binding modes were predicted computationally. The optimal n-butyl spacer was incorporated into the following A2AAR-selective (Ki, nM) conjugates: BODIPY630/650 derivative 11 (MRS7396, 24.6) and AlexaFluor488 derivative 12 (MRS7416, 30.3). Flow cytometry of 12 in hA2AAR-expressing HEK-293 cells displayed saturable binding (low nonspecific) and inhibition by known A2AAR antagonists. Water-soluble sulfonate 13 was a highly potent (Ki = 6.2 nM) and selective A2AAR antagonist based on binding and functional assays. Docking and molecular dynamics simulations predicted the regions of interaction of the distal portions of these chain-extended ligands with the A2AAR. The BODIPY630/650 fluorophore of 11 was buried in a hydrophobic interhelical (TM1/TM7) region, while AlexaFluor488 of 12 associated with the hydrophilic extracellular loops. In conclusion, we have identified novel high affinity antagonist probes for A2AAR drug discovery and characterization.Entities:
Year: 2017 PMID: 29250307 PMCID: PMC5729930 DOI: 10.1039/C7MD00247E
Source DB: PubMed Journal: Medchemcomm ISSN: 2040-2503 Impact factor: 3.597
Chart 1Structures of selective A2AAR antagonists and the target series: (A) widely used pharmacological probes and clinical candidates (1–4); (B) reported fluorescent probe 5 derived from 3 and functionalized amine congeners of varied chain length 6 explored in this study.
Scheme 1Synthesis of A2AAR antagonist functionalized congeners of 6 and their fluorescent derivatives 9–12. (a) BBr3, CH2Cl2, rt, 4 h; (b) methyl 2-bromoacetate, Cs2CO3, MeOH, 40 °C, overnight; (c) diaminoalkane, MeOH (9 : 1 v/v), rt, overnight; (d) activated fluorophore (AlexaFluor647 N-hydroxysuccinimidyl ester for 9 and 10, BODIPY 630/650 N-hydroxysuccinimidyl ester for 11, AlexaFluor488 carboxylic acid, 2,3,5,6-tetrafluorophenyl ester for 12), Et3N, DMF, rt, overnight.
AR binding affinity determined for a series of pyrazolo[4,3-e][1,2,4]triazolo[1,5-c]pyrimidin-5-amine derivatives (R1, as in Scheme 1). Human ARs, unless otherwise noted (m indicates mouse)
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| Affinity, | ||||
| Compd | Structure | A1 | A2A | A3 |
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| R = OCH3 |
| 4.1 |
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| R2 = AlexaFluor488, |
| 111 ± 16 |
|
|
|
| 1270 ± 140 | 6.8 ± 1.1 | 3970 ± 120 |
|
|
| 1300 ± 350 | 9.29 ± 7.92 | 2170 ± 660 |
|
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| 2390 ± 100 | 6.46 ± 1.63 | 5990 ± 2900 |
|
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| 1910 ± 120 | 6.36 ± 3.58 | 656 ± 132 |
|
|
| 6500 ± 2830 | 22.8 ± 8.45 | 2070 ± 850 |
|
| R = –OH |
| 48 ± 28 |
|
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| R2 = AlexaFluor647, |
| 332 ± 165, 458 ± 24 (m) |
|
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| R2 = AlexaFluor647, |
| 295 ± 176 |
|
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| R2 = BODIPY630/650, |
| 24.6 ± 17.6, 2.09 ± 0.16 (m) |
|
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| R = AlexaFluor488, | 1680 ± 470, | 30.3 ± 4.9, 585 ± 73 (m) |
|
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| R = –OCH2-Ph- | 4190 ± 750, | 6.24 ± 2.42, 64.1 ± 5.3 (m) | 2660 ± 1250, |
Competition radioligand binding assays were conducted with membranes prepared from HEK-293 cells expressing recombinant A1, A2A, or A3ARs (human) unless otherwise noted. Their incubation was performed for 1 h at 25 °C. The radioligands used were: A1AR, [3H]8-cyclopentyl-1,3-dipropylxanthine ([3H]DPCPX, 0.5 nM) 14; A2AAR, [3H]ZM241385 2 (1.0 nM) or from published data13 (as noted) [3H]2-[p-(2-carboxyethyl)phenyl-ethylamino]-5′-N-ethylcarboxamidoadenosine ([3H]CGS21680, 10 nM) 15; A3AR, [125I]N6-(4-amino-3-iodobenzyl)adenosine-5′-N-methyluronamide ([125I]I-AB-MECA, 0.2 nM) 16. Nonspecific binding was determined using 10 μM 8-[4-[[[[(2-aminoethyl)amino]carbonyl]methyl]oxy]phenyl]-1,3-dipropylxanthine (XAC) 17 (A1AR and A2AAR) or 10 μM adenosine-5′-N-ethyluronamide (NECA) 18 (A3AR). HEK-293 cells expressing recombinant mA1, mA2A, or mA3ARs were used. Values are expressed as the mean ± SEM from 3 independent experiments. The cell lines were from the American Type Culture Collection (ATCC, Manassas, VA), and the cDNA for the ARs was obtained from cdna.org.
Data from Kumar et al. and Kecskés et al.13,14
Percent inhibition at 10 μM.
Fluorophore moiety, as shown in Scheme 1 (R2).
Using [3H]16 as the radioligand.
11, MRS7396; 12, MRS7416; 13, MRS7352.
Fig. 1Antagonist radioligand ([3H]2, 1.0 nM) binding inhibition curves for the hA2AAR for four antagonist fluorescent conjugates. Compound numbers: MRS7322 9, MRS7395 10, MRS7396 11 and MRS7416 12. Membranes from HEK-293 cells expressing the hA2AAR were used, and their incubation was performed for 1 h at 25 °C. Results are expressed as the mean ± SEM. The Ki values from three independent experiments are listed in Table 1.
Fig. 2Molecular modeling of antagonist binding to the hA2AAR. Details of the binding site of the X-ray structure of the receptor modeled with various ligands docked: (A) known antagonist 3, with the retention of a subset of water molecules found in the high resolution A2AAR structure;17 (B) the BODIPY630/650-labeled antagonist 11, showing the most energetically favorable orientation of the terminal fluorophore chain; side (C) and top (D) views of the two possible orientations of the fluorophore group of derivative 12. Residues establishing polar (dashed orange lines) and π–π interactions with the docked ligands are represented as sticks. Aromatic residues establishing hydrophobic contacts with the terminal fluorophore of compound 11 are represented as transparent surfaces with colors matching the corresponding TM domain. Non-polar hydrogen atoms are omitted.
Fig. 3Modeling of antagonist 13 binding to the hA2AAR: side (A) and top (B) views of the three possible orientations (BM1, blue; BM2, magenta; BM3, orange) of the p-sulfophenyl tail. Residues establishing polar (dashed orange lines) and π–π interactions with the docked ligands are represented as sticks. Non-polar hydrogen atoms are omitted.
Fig. 4Saturation of fluorescent antagonists 11 (A) and 12 (B) in hA2AAR-expressing HEK-293 cells measured using flow cytometry following a 1 h incubation at 37 °C. Non-specific binding was determined with 10 μM 3. Results are expressed as the mean ± SEM. The Kd value calculated from Fig. 4B is listed in the text.
Fig. 5Inhibition of the specific binding of fluorescent antagonist 12 (10 nM, 1 h incubation at 37 °C) in hA2AAR-expressing HEK-293 cells measured using flow cytometry. Competing antagonists were: nonxanthine 3 and xanthine 17. Non-specific binding was determined with 10 μM 3. Results are expressed as the mean ± SEM. The Ki values are listed in the text.