| Literature DB >> 29250037 |
Qing Li1, Nan Zhao1, Mu Liu1, Haimo Shen1,2, Lin Huang1, Xiaojin Mo2, Bin Xu2, Xumin Zhang1, Wei Hu1,2.
Abstract
Schistosomiasis is a devastating parasitic disease caused by tremotodes of the genus Schistosoma. Eggs produced by sexually mature schistosomes are the causative agents of for pathogenesis and transmission. Elucidating the molecular mechanism of schistosome development and sexual maturation would facilitate the prevention and control of schistosomiasis. Acetylation of lysine is a dynamic and reversible post-translational modification playing keys role in many biological processes including development in both eukaryotes and prokaryotes. To investigate the impacts of lysine acetylation on Schistosoma japonicum (S. japonicum) development and sexual maturation, we used immunoaffinity-based acetyllysine peptide enrichment combined with mass spectrometry (MS), to perform the first comparative analysis of proteome-wide lysine acetylation in both female and male, juvenile (18 days post infection, 18 dpi) and adult (28 dpi) schistosome samples. In total, we identified 874 unique acetylated sites in 494 acetylated proteins. The four samples shared 47 acetylated sites and 46 proteins. More acetylated sites and proteins shared by both females and males were identified in 28 dpi adults (189 and 143, respectively) than in 18 dpi schistosomula (76 and 59, respectively). More stage-unique acetylated sites and proteins were also identified in 28 dpi adults (494 and 210, respectively) than in 18 dpi schistosomula (73 and 44, respectively). Functional annotation showed that in different developmental stages and genders, a number of proteins involving in muscle movement, glycometabolism, lipid metabolism, energy metabolism, environmental stress resistance, antioxidation, etc., displayed distinct acetylation profiles, which was in accordance with the changes of their biological functions during schistosome development, suggesting that lysine acetylation modification exerted important regulatory roles in schistosome development. Taken together, our data provided the first comparative global survey of lysine acetylation in juvenile and adult S. japonicum, which would deepen our understanding of the molecular mechanism of schistosome development and sexual maturation, and provide clues for the development of new anti-schistosome strategies.Entities:
Keywords: Schistosoma japonicum; development; lysine acetylation; post translation modification; proteome
Year: 2017 PMID: 29250037 PMCID: PMC5715381 DOI: 10.3389/fmicb.2017.02248
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Figure 1Proteomic analysis strategy to profile the acetylated protein components of S. japonicum. (A) Overview of analytical procedures used in this study; (B) Venn diagram showing the distribution of the acetylated proteins identified from the four samples.
Acetylated sites and acetylated proteins of different S. japonicum samples.
| 18 dpi female | 231 | 162 |
| 18 dpi male | 102 | 71 |
| 28 dpi female | 430 | 281 |
| 28 dpi male | 616 | 346 |
| Total | 874 | 494 |
Figure 2Relative abundance of each amino acid residues surrounding sites of acetylated lysines in proteins of four samples. (A) 18 dpi female; (B) 18 dpi male; (C) 28 dpi female; (D) 28 dpi male. The amino acids in specific positions of acetylated lysine (6 amino acids upstream and down stream of the acetylation site) were identified by Motif-X software.
Figure 3Heatmaps of amino acid compositions of acetylation sites in four samples. (A) 18 dpi female; (B) 18 dpi male; (C) 28 dpi female; (D) 28 dpi male. Amino acids that are significantly enriched (green) or depleted (red) compared to the general amino acid composition were displayed.
Figure 4Distribution of acetylated proteins based on the numbers of acetylation sites.
Figure 5Subcellular localization of acetylated proteins in four samples. (A) 18 dpi female; (B) 18 dpi male; (C) 28 dpi female; (D) 28 dpi male.
Figure 6GO functional classification of the identified acetylated proteins based on biological processes in four samples. (A) 18 dpi female; (B) 18 dpi male; (C) 28 dpi female; (D) 28 dpi male.
Figure 7GO functional classification of the identified acetylated proteins based on molecular function in four samples. (A) 18 dpi female; (B) 18 dpi male; (C) 28 dpi female; (D) 28 dpi male.
Figure 8GO functional classification of the identified acetylated proteins based on cellular components in four samples. (A) 18 dpi female; (B) 18 dpi male; (C) 28 dpi female; (D) 28 dpi male.
Figure 9KEGG enrichment pathway analyses in four samples. (A) 18 dpi female; (B) 18 dpi male; (C) 28 dpi female; (D) 28 dpi male.
List of molecular function enrichment of acetylated proteins in all samples.
| Protein binding | 49 | 66 | 53 | 124 |
| Organic cyclic compound binding | 74 | 69 | 79 | 125 |
| Heterocyclic compound binding | 73 | 68 | 78 | 124 |
| Ion binding | 55 | 65 | 59 | 126 |
| Structural constituent of ribosome | 11 | 6 | 11 | 17 |
| Small molecule binding | 49 | 53 | 52 | 95 |
| Carbohydrate derivative binding | 41 | 39 | 43 | 80 |
| Transferase activity | 16 | 16 | 17 | 36 |
| Ligase activity | 9 | 6 | 9 | 13 |
| Lipid binding | 4 | 8 | 5 | 15 |
| Structural constituent of cytoskeleton | 3 | 3 | 3 | 6 |
| Structural constituent of muscle | 3 | 3 | 4 | 4 |
| Hydrolase activity | 29 | 43 | 31 | 68 |
| Oxidoreductase activity | 7 | 15 | 7 | 21 |
| Chromatin binding | 3 | 1 | 3 | 4 |
| Cofactor binding | 3 | 9 | 3 | 11 |
| Metal cluster binding | 4 | 4 | 4 | 4 |
| Signal transducer activity | 4 | – | 4 | 4 |
| Transcription factor binding | 2 | 2 | 2 | 3 |
| Sulfur compound binding | 1 | 3 | 1 | 5 |
| Sequence–specific DNA binding | 1 | – | 1 | 3 |
| Enzyme inhibitor activity | 1 | 2 | 1 | 3 |
| Substrate–specific transporter activity | 4 | 9 | 4 | 10 |
| Carbohydrate binding | 1 | – | 1 | 1 |
| Isomerase activity | 3 | 7 | 3 | 9 |
| Lyase activity | 3 | 6 | 3 | 6 |
| Small protein activating enzyme activity | 1 | – | 1 | 1 |
| Drug binding | 1 | – | 1 | 1 |
| Transmembrane transporter activity | 3 | 8 | 3 | 9 |
| Enzyme activator activity | – | – | 1 | 1 |
| Nucleoside–triphosphatase regulator activity | – | 1 | 1 | 5 |
| Peptidase regulator activity | – | 1 | – | 1 |
| Kinase regulator activity | – | – | – | 3 |
| Calcium channel regulator activity | – | – | – | 1 |
| Channel inhibitor activity | – | – | – | 1 |
♀, Female; ♂, Male.
Biological function clusterings of stage-specific acetylated proteins in all samples.
| Glucose metabolism | 2 | 3 | 1 | 5 |
| Regulation of tanscription and translation | 4 | 6 | 0 | 4 |
| Cell proliferation | 3 | 3 | 0 | 3 |
| Immune suppression | 3 | 0 | 0 | 0 |
| Muscular movement | 3 | 0 | 0 | 9 |
| Antioxidant | 0 | 3 | 1 | 7 |
| Lipid metabolism | 0 | 2 | 0 | 3 |
| Transport (protein, molecular) | 0 | 6 | 0 | 9 |
| Energy metabolism | 0 | 6 | 0 | 5 |
| Protein degradation | 0 | 6 | 1 | 3 |
| Signaling | 0 | 0 | 1 | 10 |
| Environmental stress resistance | 0 | 0 | 0 | 4 |
♀, female; ♂, male.
Biological function clustering of acetylated proteins specific in 18 dpi females.
| Glucose metabolism | Sjc_0046600 | ko:K01187 alpha-glucosidase [EC3.2.1.20], putative |
| Sjc_0030250 | ko:K00033 6-phosphogluconate dehydrogenase [EC1.1.1.44], putative | |
| Regulation of transcription and translation | Sjc_0019830 | SAGA-associated factor 29 homolog, putative |
| Sjc_0210040 | Similar to Putative U5 small nuclearear ribonucleareoprotein 200 kDa helicase, putative | |
| Sjc_0208180 | ko:K09497 T-complex protein 1 subunit epsilon, putative | |
| Sjc_0068070 | Ufm1-conjugating enzyme 1, putative | |
| Cell proliferation | Sjc_0005910 | ko:K01919 glutamate–cysteine ligase [EC6.3.2.2], putative |
| Sjc_0303290 | Cysteine and histidine-rich domain-containing protein 1, putative | |
| Sjc_0301340 | Far upstream element-binding protein 2, putative | |
| Immune suppression | Sjc_0025140 | ko:K09568 FK506-binding protein 1, putative |
| Sjc_0303020 | ko:K01802 peptidylprolyl isomerase [EC5.2.1.8], putative | |
| Sjc_0091280 | IPR001152, Thymosin beta-4, domain-containing | |
| Muscular movement | Sjc_0002370 | Actin-2, putative |
| Sjc_0042620 | ko:K05692 actin beta/gamma 1, putative | |
| Sjc_0004280 | ko:K07374 tubulin alpha, putative |
Biological function clustering of acetylated proteins specific in 28 dpi females.
| Glucose metabolism | Sjc_0211220 | IPR006015, Universal stress protein (Usp); IPR006016, UspA, domain-containing |
| Sjc_0301250 | ko:K01810 glucose-6-phosphate isomerase [EC5.3.1.9], putative | |
| Sjc_0073030 | ko:K00164 2-oxoglutarate dehydrogenase E1 component [EC1.2.4.2], putative | |
| Cell proliferation | Sjc_0094390 | IPR002049, EGF-like, laminin; IPR003599, Immunoglobulin subtype;IPR013032, EGF-like region; IPR007110, Immunoglobulin-like, domain-containing |
| Sjc_0214350 | ko:K06942 OLA1; Obg-like ATPase 1, putative | |
| Sjc_0088690 | Neuroblast differentiation-associated protein AHNAK, putative | |
| Regulation of transcription and translation | Sjc_0214350 | ko:K06942 OLA1; Obg-like ATPase 1, putative |
| Sjc_0030640 | ko:K03687 molecular chaperone GrpE, putative | |
| Sjc_0031970 | Eukaryotic translation initiation factor 3 subunit A, putative | |
| Sjc_0212210 | RNA-binding protein 4, putative | |
| Sjc_0025200 | ko:K03122 transcription initiation factor TFIIA large subunit, putative | |
| Sjc_0031970 | Eukaryotic translation initiation factor 3 subunit A, putative | |
| Antioxidant | Sjc_0038300 | ko:K00799 glutathione S-transferase [EC2.5.1.18], putative |
| Sjc_0035630 | ko:K00871 phosphorylase kinase gamma subunit [EC2.7.11.19], putative | |
| Sjc_0078530 | ko:K01069 hydroxyacylglutathione hydrolase [EC3.1.2.6], putative | |
| Transport | Sjc_0101450 | IPR001464, Annexin, domain-containing |
| Sjc_0209790 | ko:K02150 V-type H+-transporting ATPase subunit E, putative | |
| Sjc_0211260 | Annexin A7, putative | |
| Sjc_0032940 | IPR008387, ATPase, F0 complex, subunit F6, mitochondrial, domain-containing | |
| Sjc_0071850 | Phosphate carrier protein, mitochondrial precursor, putative | |
| Sjc_0043880 | Vacuolar protein sorting-associated protein 13A, putative | |
| Energy metabolism | Sjc_0200590 | ko:K00933 creatine kinase [EC2.7.3.2], putative |
| Sjc_0049690 | ATP synthase subunit O, mitochondrial precursor, putative | |
| Sjc_0304690 | ko:K01803 triosephosphate isomerase (TIM) [EC5.3.1.1], putative | |
| Sjc_0114080 | ko:K00261 glutamate dehydrogenase (NAD(P)+) [EC1.4.1.3], putative | |
| Sjc_0217510 | ko:K01676 fumarate hydratase, class I [EC4.2.1.2A], putative | |
| Sjc_0054460 | ko:K00016 L-lactate dehydrogenase [EC1.1.1.27], putative | |
| Protein degradation | Sjc_0068310 | ko:K02736 20S proteasome subunit beta 7, putative |
| Sjc_0064130 | ko:K06690 20S proteasome subunit alpha 8, putative | |
| Sjc_0096060 | ko:K03036 26S proteasome regulatory subunit N6, putative | |
| Sjc_0060830 | ko:K05610 ubiquitin carboxyl-terminal hydrolase L5, putative | |
| Sjc_0068410 | Cullin-associated NEDD8-dissociated protein 1, putative | |
| Sjc_0214180 | Cathepsin B-like cysteine proteinase precursor, putative |
Biological function clustering of acetylated proteins specific in 18 dpi males.
| Glucose metabolism | Sjc_0046600 | ko:K01187 alpha-glucosidase [EC3.2.1.20], putative |
| Antioxidant | Sjc_0042620 | ko:K05692 actin beta/gamma 1, putative |
| Protein degradation | Sjc_0065510 | ko:K03178 ubiquitin-activating enzyme E1, putative |
| Signaling | Sjc_0006130 | TBC1 domain family member 15, putative |
Biological function clustering of acetylated proteins specific in 28 dpi males.
| Glucose metabolism | Sjc_0211850 | ko:K00615 transketolase [EC2.2.1.1], putative |
| Sjc_0207460 | ko:K00026 malate dehydrogenase [EC1.1.1.37B], putative | |
| Sjc_0211970 | ko:K00850 6-phosphofructokinase [EC2.7.1.11], putative | |
| Sjc_0301250 | ko:K01810 glucose-6-phosphate isomerase [EC5.3.1.9], putative | |
| Sjc_0201440 | ko:K00873 pyruvate kinase [EC2.7.1.40], putative | |
| Regulation of transcription and translation | Sjc_0219200 | ko:K03242 translation initiation factor eIF-2 gamma subunit, putative |
| Sjc_0057730 | Nocturnin, putative | |
| Sjc_0216870 | WW domain-binding protein 11, putative | |
| Sjc_0001510 | ko:K06100 symplekin, putative | |
| Antioxidant | Sjc_0038300 | ko:K00799 glutathione S-transferase [EC2.5.1.18], putative |
| Sjc_0039090 | ko:K03671 thioredoxin 1, putative | |
| Sjc_0026090 | ko:K00036 glucose-6-phosphate 1-dehydrogenase [EC1.1.1.49], putative | |
| Sjc_0095720 | ko:K03386 peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC1.11.1.15], putative | |
| Sjc_0030250 | ko:K00033 6-phosphogluconate dehydrogenase [EC1.1.1.44], putative | |
| Sjc_0005910 | ko:K01919 glutamate–cysteine ligase [EC6.3.2.2], putative | |
| Sjc_0008070 | ko:K05687 protein DJ-1, putative | |
| Protein degradation | Sjc_0300430 | ko:K08585 calpain, invertebrate, putative |
| Sjc_0056120 | Suppressor of G2 allele of SKP1 homolog, putative | |
| Sjc_0102150 | Similar to Ubiquitin-conjugating enzyme E2-17 kDa, putative | |
| Signaling | Sjc_0093470 | Rab GDP dissociation inhibitor alpha, putative |
| Sjc_0101350 | ko:K01768 adenylate cyclase [EC4.6.1.1], putative | |
| Sjc_0302840 | ko:K04739 cAMP-dependent protein kinase regulator, putative | |
| Sjc_0211700 | ko:K02183 calmodulin, putative | |
| Sjc_0001030 | ko:K01802 peptidylprolyl isomerase [EC5.2.1.8], putative | |
| Sjc_0092590 | ko:K06630 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation, putative | |
| Sjc_0053680 | 14-3-3 protein beta/alpha-A, putative | |
| Sjc_0121020 | Calcium/calmodulin-dependent protein kinase type II alpha chain, putative | |
| Sjc_0021650 | ko:K03115 casein kinase 2, beta polypeptide, putative | |
| Sjc_0069470 | IPR000198,RhoGAP;IPR008936,Rho GTPase activation protein,domain-containing | |
| Resist environmental pressure | Sjc_0211220 | IPR006015, Universal stress protein (Usp); IPR006016, UspA,domain-containing |
| Sjc_0210600 | IPR006015, Universal stress protein (Usp); IPR014729,Rossmann-like alpha/beta/alpha sandwich fold;IPR006016, UspA, domain-containing | |
| Sjc_0011870 | ko:K06174 ATP-binding cassette, sub-family E, member 1, putative | |
| Sjc_0094860 | ko:K09510 DnaJ homolog, subfamily B, member 4, putative | |
| Muscular movement | Sjc_0044580 | IPR002048, Calcium-binding EF-hand, domain-containing |
| Sjc_0304180 | ko:K10373 tropomyosin 1, putative | |
| Sjc_0211400 | Myosin regulatory light chain A, smooth adductor muscle, putative | |
| Sjc_0102250 | IPR002048, Calcium-binding EF-hand, domain-containing | |
| Sjc_0202230 | ko:K09377 cysteine and glycine-rich protein, putative | |
| Sjc_0024050 | Alpha-adducin, putative | |
| Sjc_0026420 | Troponin I 4, putative | |
| Sjc_0106490 | PDZ and LIM domain protein 3, putative | |
| Sjc_0012060 | ko:K06094 lethal giant larvae, putative | |
| Energy metabolism | Sjc_0214350 | ko:K06942 OLA1; Obg-like ATPase 1, putative |
| Sjc_0200590 | ko:K00933 creatine kinase [EC2.7.3.2], putative | |
| Sjc_0049690 | ATP synthase subunit O, mitochondrial precursor, putative | |
| Sjc_0000230 | ko:K01509 adenosinetriphosphatase [EC3.6.1.3], putative | |
| Sjc_0205700 | ko:K00382 dihydrolipoamide dehydrogenase [EC1.8.1.4], putative | |
| Transport | Sjc_0304010 | ko:K08495 golgi SNAP receptor complex member 1, putative |
| Sjc_0209790 | ko:K02150 V-type H+-transporting ATPase subunit E, putative | |
| Sjc_0035720 | ko:K09500 T-complex protein 1 subunit theta, putative | |
| Sjc_0300180 | Coatomer subunit gamma-2, putative | |
| Sjc_0071910 | ko:K07936 GTP-binding nuclear protein Ran, putative | |
| Sjc_0005410 | ko:K07881 Ras-related protein Rab-14, putative | |
| Sjc_0124170 | Intersectin-1, putative | |
| Sjc_0207310 | ko:K07949 ADP-ribosylation factor-like 5A, putative | |
| Sjc_0080950 | AP-2 complex subunit alpha-2, putative | |
| Lipid metabolism | Sjc_0213210 | ko:K10258 enoyl reductase, putative |
| Sjc_0027600 | ko:K01648 ATP citrate (pro-S)-lyase [EC2.3.3.8], putative | |
| Sjc_0303020 | ko:K01802 peptidylprolyl isomerase [EC5.2.1.8], putative | |
| Cell proliferation | Sjc_0014710 | ko:K02449 cyclin-dependent kinase 10, putative |
| Sjc_0051340 | High mobility group protein DSP1, putative | |
| Sjc_0300100 | ko:K02605 origin recognition complex subunit 3, putative |