Literature DB >> 29249693

Site-Specific Installation of Succinyl Lysine Analog into Histones Reveals the Effect of H2BK34 Succinylation on Nucleosome Dynamics.

Yihang Jing1, Zheng Liu1, Gaofei Tian1, Xiucong Bao1, Toyotaka Ishibashi2, Xiang David Li3.   

Abstract

Posttranslational modifications of histones play key roles in the dynamic regulation of chromatin structure. Lysine succinylation is a new type of histone modification, but its biological significance in chromatin structure and dynamics remains unknown. Here we develop a chemical approach to site-specifically install a succinyl lysine analog into histones. This analog serves as an ideal structural and functional mimic to natural succinyl lysine. The incorporation of this succinylation mimic into histone H2B at lysine 34, a succinylation site at the nucleosomal DNA-histone interface, leads to significant decrease in nucleosome stability in vitro, which is consistent with the defects in chromatin structure of a budding yeast strain containing a lysine-to-glutamate mutation at the corresponding residue of yeast histone H2B. This study provides a simple method for the rapid generation of histones with site-specific succinylation mimics, and reveals novel regulatory mechanisms of histone succinylation in the dynamic organization of chromatin.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  SIRT5; chromatin structure; crotonylation; histone modification; nucleosome; protein labelling; sirtuin; succinylation; thiol-ene reaction

Mesh:

Substances:

Year:  2017        PMID: 29249693     DOI: 10.1016/j.chembiol.2017.11.005

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  11 in total

Review 1.  Post-Translational Modifications of Histones Are Versatile Regulators of Fungal Development and Secondary Metabolism.

Authors:  Aurelie Etier; Fabien Dumetz; Sylvain Chéreau; Nadia Ponts
Journal:  Toxins (Basel)       Date:  2022-04-29       Impact factor: 5.075

Review 2.  The Chemical Biology of Reversible Lysine Post-translational Modifications.

Authors:  Zhipeng A Wang; Philip A Cole
Journal:  Cell Chem Biol       Date:  2020-07-21       Impact factor: 8.116

3.  Hydrazide Mimics for Protein Lysine Acylation To Assess Nucleosome Dynamics and Deubiquitinase Action.

Authors:  Shridhar Bhat; Yousang Hwang; Matthew D Gibson; Michael T Morgan; Sean D Taverna; Yingming Zhao; Cynthia Wolberger; Michael G Poirier; Philip A Cole
Journal:  J Am Chem Soc       Date:  2018-07-24       Impact factor: 15.419

Review 4.  Large-Scale Assessment of Bioinformatics Tools for Lysine Succinylation Sites.

Authors:  Md Mehedi Hasan; Mst Shamima Khatun; Hiroyuki Kurata
Journal:  Cells       Date:  2019-01-28       Impact factor: 6.600

5.  KAT2A Promotes Hepatitis B Virus Transcription and Replication Through Epigenetic Regulation of cccDNA Minichromosome.

Authors:  Yi-Ping Qin; Hai-Bo Yu; Si-Yu Yuan; Zhen Yang; Fang Ren; Qing Wang; Fan Li; Ji-Hua Ren; Sheng-Tao Cheng; Yu-Jiao Zhou; Xin He; Hong-Zhong Zhou; Yuan Zhang; Ming Tan; Min-Li Yang; Da-Peng Zhang; Xu Wen; Mei-Ling Dong; Hui Zhang; Jing Liu; Zhi-Hong Li; Yao Chen; Ai-Long Huang; Wei-Xian Chen; Juan Chen
Journal:  Front Microbiol       Date:  2022-01-24       Impact factor: 5.640

Review 6.  Roles of Negatively Charged Histone Lysine Acylations in Regulating Nucleosome Structure and Dynamics.

Authors:  Yihang Jing; Xin Li; Zheng Liu; Xiang David Li
Journal:  Front Mol Biosci       Date:  2022-04-25

Review 7.  Recent Advances in Investigating Functional Dynamics of Chromatin.

Authors:  Xiangyan Shi; Ziwei Zhai; Yinglu Chen; Jindi Li; Lars Nordenskiöld
Journal:  Front Genet       Date:  2022-04-05       Impact factor: 4.772

8.  DNAzymes for amine and peptide lysine acylation.

Authors:  Tianjiong Yao; Jack J Przybyla; Peter Yeh; Austin M Woodard; Hannah J Nilsson; Benjamin M Brandsen; Scott K Silverman
Journal:  Org Biomol Chem       Date:  2021-01-06       Impact factor: 3.876

9.  Protocol for the preparation of site-specific succinylated histone mimics to investigate the impact on nucleosome dynamics.

Authors:  Yihang Jing; Zheng Liu; Xiang David Li
Journal:  STAR Protoc       Date:  2021-06-12

Review 10.  Histone succinylation and its function on the nucleosome.

Authors:  Jiayi Liu; Yu Shangguan; Donge Tang; Yong Dai
Journal:  J Cell Mol Med       Date:  2021-06-23       Impact factor: 5.310

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