| Literature DB >> 29239247 |
Chan Zhang1,2, Yan He1, Ke-Ren Shan1, Kui Tan1, Ting Zhang1, Chan-Juan Wang1, Zhi-Zhong Guan1,3.
Abstract
Objective To determine whether genetic polymorphisms in the uridine diphosphate-glucuronosyltransferase 1A ( UGT1A) and the C-C motif chemokine receptor 5 ( CCR5) genes are associated with hepatitis B virus (HBV) infection in Yi, Yao and Han ethnic groups in the Guizhou Province of China. Methods The study enrolled subjects with and without HBV infection. Whole blood was used for DNA genotyping using standard techniques. The study determined the frequencies of several polymorphic alleles ( UGT1A6 [rs2070959], UGT1A1 [rs8175347], CCR5-59029 [rs1799987] and CCR5Δ32 [rs333]) and then characterized their relationship with HBV infection. Results A total of 404 subjects were enrolled in the study: 138 from the Yao group, 101 from the Yi group and 165 from the Han group. There was a significant difference in the frequency of UGT1A1 rs8175347 polymorphisms among the three groups. The rates of 7TA carriers of UGT1A1 rs8175347 in all three groups were significantly higher than the other genotypes. Individuals with genotype AA of UGT1A6 rs2070959 in the Yi group had a higher risk for HBV infection than in the Yao and Han groups. The frequency of genotype GG in CCR5-59029 in the Yao group was significantly higher than in the Yi group. The genotypes of CCR5Δ32 were not associated with HBV infection. Conclusion These findings provide genetic and epidemiological evidence for an association of UGT1A and CCR5-59029 polymorphisms with HBV infection in Chinese Yi and Yao populations.Entities:
Keywords: C-C motif chemokine receptor 5 (CCR5); ethnic minorities; gene polymorphisms; hepatitis B virus infection; uridine diphosphate-glucuronosyltransferase 1A (UGT-1A)
Mesh:
Substances:
Year: 2017 PMID: 29239247 PMCID: PMC5971517 DOI: 10.1177/0300060517730174
Source DB: PubMed Journal: J Int Med Res ISSN: 0300-0605 Impact factor: 1.671
Sequences of the primers used for genotyping in this study that investigated the relationship between polymorphisms in the C-C motif chemokine receptor 5 (CCR5) and uridine diphosphate- glucuronosyltransferase 1A (UGT1A) genes and hepatitis B virus infection in two ethnic minority Chinese groups compared with a Han Chinese group.
| Gene and loci | Upstream primer | Downstream primer | Product length, base pairs |
|---|---|---|---|
| 5′-CTACATAGTCGTCCTTCTTC-3′ | 5′-ACAGTATCTTCCCAGCAT-3′ | 433 | |
| a:5′-TAAGGAGAGCAAGTTTGATGCTC-3 | 5′-GTCTGGGCTTCTGCTGATTGT-3′ | 145 | |
| b:5′-GGTTTTCCGTGTTCCCTGGAGGATG-3 | 5′-CTCTTGAGGACAGCTGATGC-3′ | 200 | |
| c:5′-TAAGGAGAGCAAGTTTGATGCTC-3′ | 5′-CTCTTGAGGACAGCTGATGC-3′ | 300 | |
| 5′-GAAGAATCCTGCCACCTAT-3′ | 5′-CTCTGCTCATCCCACTACA-3′ | 559 | |
| 5′-AGGTCTTCATTACACCTGCAGC-3′ | 5′-CTTCTCATTTCGACACCGAAGC-3′ | 169 (wild-type)137 (mutant) |
Clinical and demographic characteristics of the three Chinese ethnic groups enrolled in this study that investigated the relationship between polymorphisms in the C-C motif chemokine receptor 5 (CCR5) and uridine diphosphate- glucuronosyltransferase 1A (UGT1A) genes and hepatitis B virus (HBV) infection.
| Characteristic | Yi Group | Yao Group | Han Group |
|---|---|---|---|
| Age, years | 46.39 ± 13.91 | 56.00 ± 13.20 | 44.72 ± 16.75 |
| Sex | |||
| Male | 50 (49.5) | 55 (39.9) | 66 (40.0) |
| Female | 51 (50.5) | 83 (60.1) | 99 (60.0) |
| Infected with HBV | 53 (52.5) | 80 (58.0) | 130 (78.8) |
| Not infected with HBV | 48 (47.5) | 58 (42.0) | 35 (21.2) |
Data presented as mean ± SD of n of subjects (%).
aRepeated seropositivity for hepatitis B core antibody (anti-HBc), hepatitis B surface antibody (anti-HBs) and/or hepatitis B surface antigen (HBsAg) over a 6-month period.
bSeronegativity for anti-HBc, anti-HBs or HBsAg.
The frequency of the UGTA1 rs8175347 genotypes among the three Chinese ethnic groups who were enrolled in this study that investigated the relationship between polymorphisms in the C-C motif chemokine receptor 5 (CCR5) and uridine diphosphate- glucuronosyltransferase 1A (UGT1A) genes and hepatitis B virus infection.
| Length of product (genotype) | Yi Group | Yao Group | Han Group | Statistical significance |
|---|---|---|---|---|
| 431 bp (6TA) | 33 (16.3) | 28 (10.1) | 26 (7.9) | χ2 = 17.56 |
| 433 bp (7TA) | 160 (79.2) | 231 (83.7) | 267 (80.9) | |
| 435 bp (8TA) | 9 (4.5) | 17 (6.2) | 37 (11.2) |
Data presented as n of genes (%).
aThe statistical analysis (χ2 = 17.56 and P = 0.002) indicated a significant difference in the frequency of UGTA1 rs8175347 among these three groups.
bP < 0.05, significant differences in the frequency of 6TA among the three ethnic groups; χ2-test.
cP < 0.05, significant difference in the frequency of 8TA between the Yi and Han groups; χ2-test.
bp, base pairs.
The frequency of the UGTA1 rs8175347 genotypes among the three Chinese ethnic groups stratified according to hepatitis B virus (HBV) infection status.
| Ethnic groups | Genotype | HBV infected | HBV uninfected | Statistical significance | Odds ratio (95% CI) | |
|---|---|---|---|---|---|---|
| Yi* | χ2= 4.974 | |||||
| 431 bp (6TA) | 21 (19.8) | 12 (12.5) | χ2 = 1.970 | 1.585 (0.825, 3.046) | ||
| 433 bp (7TA) | 83 (78.3) | 77 (80.2) | χ2 = 0.111 | |||
| 435 bp (8TA) | 2 (1.9) | 7 (7.3) | χ2 = 3.457 | χ2 = 16.7 | ||
| Yao | χ2 = 4.626 | |||||
| 431 bp (6TA) | 11 (6.9) | 17 (14.7) | χ2 = 4.465 | |||
| 433 bp (7TA) | 138 (86.3) | 93 (80.2) | χ2 = 1.820 | 1.215 (0.463, 3.185) | ||
| 435 bp (8TA) | 11 (6.9) | 6 (5.2) | χ2 = 0.337 | |||
| Han | χ2 = 1.597 | |||||
| 431 bp (6TA) | 18 (6.9) | 8 (11.4) | χ2 = 1.542 | |||
| 433 bp (7TA) | 212 (81.5) | 55 (78.6) | χ2 = 0.314 | 1.038 (0.906, 1.188) | ||
| 435 bp (8TA) | 30 (11.5) | 7 (10.0) | χ2
| |||
Data presented as n of genes (%).
aP-value from χ2-test with two degrees of freedom.
bP-value from χ2-test with one degree of freedom.
cP-value from χ2-test in the same genotype between Yi and Yao groups with two degrees of freedom.
*P < 0.01, significant difference in the frequency of 8TA between the Yi and Yao groups; χ2-test.
CI, confidence interval; bp, base pairs; NS, no significant difference (P ≥ 0.05).
The frequency of the UGT1A6 rs2070959 genotypes among the three Chinese ethnic groups stratified according to hepatitis B virus (HBV) infection status.
| Ethnic groups | Genotype | HBV infected | HBV uninfected | Statistical significance | Odds ratio (95% CI) | |
|---|---|---|---|---|---|---|
| Yi* | χ[ | |||||
| GG | 1 (1.9) | 3 (6.3) | χ[ | |||
| AG | 19 (35.8) | 22 (45.8) | χ[ | |||
| AA | 33 (62.3) | 23 (47.9) | χ[ | χ[ | 1.793 (0.811, 3.964) | |
| Yao | χ[ | |||||
| GG | 11 (13.8) | 6 (10.3) | χ[ | |||
| AG | 32 (40.0) | 28 (48.3) | χ[ | |||
| AA | 37 (46.3) | 24 (41.4) | χ[ | 1.219 (0.616, 2.143) | ||
| Han | χ[ | |||||
| GG | 21 (16.2) | 4 (11.4) | χ[ | χ[ | ||
| AG | 42 (32.3) | 17 (48.6) | χ[ | |||
| AA | 67 (51.5) | 14 (40.0) | χ[ | 1.595 (0.747, 3.407) | ||
Data presented as n of subjects (%).
aP-value from χ2-test with two degrees of freedom.
bP-value from χ2-test with one degree of freedom.
cP-value from χ2-test in the same genotype between Yi and Yao groups with two degrees of freedom.
dP-value from χ2-test in the same genotype between Han and Yi groups with two degrees of freedom.
*P < 0.05, significant difference between the Yi and Yao groups; χ2-test.
#P < 0.05, significant difference between the Han and Yi groups; χ2-test.
CI, confidence interval; NS, no significant difference (P ≥ 0.05).
The frequency of the CCR5-59029 genotypes among the three Chinese ethnic groups stratified according to hepatitis B virus (HBV) infection status.
| Ethnic groups | Genotype | HBV infected | HBV uninfected | Statistical significance | Odds ratio(95% CI) | |
|---|---|---|---|---|---|---|
| Yi* | χ[ | |||||
| GG | 16 (30.2) | 22 (45.8) | χ[ | |||
| GA | 24 (45.3) | 21 (43.8) | χ[ | χ[ | 1.064 (0.485, 2.335) | |
| AA | 13 (24.5) | 5 (10.4) | χ[ | 2.795 (0.914, 8.546) | ||
| Yao | χ[ | |||||
| GG | 38 (47.5) | 40 (69.0) | χ[ | |||
| GA | 33 (41.3) | 15 (25.9) | χ[ | 2.013 (0.963, 4.207) | ||
| AA | 9 (11.3) | 3 (5.2) | χ[ | 2.324 (0.601, 8.994) | ||
| Han | χ[ | |||||
| GG | 45 (34.6) | 9 (25.7) | χ[ | χ[ | 1.529 (0.660, 3.542) | |
| GA | 56 (43.1) | 18 (51.4) | χ[ | |||
| AA | 29 (22.3) | 8 (22.9) | χ[ | |||
Data presented as n of subjects (%).
aP-value from χ2-test with two degrees of freedom.
bP-value from χ2-test with one degree of freedom.
cP-value from χ2-test in the same genotype between Yi and Yao groups with two degrees of freedom.
dP-value from χ2-test in the same genotype between Han and Yao groups with two degrees of freedom.
*P < 0.01, significant difference between the Yi and Yao groups; χ[2] = 9.59; P = 0.008; χ2-test.
#P < 0.05, significant difference in those with the same genotype between the Han and Yi groups; χ[2] = 20.41; P < 0.01); χ2-test.
CI, confidence interval; NS, no significant difference (P ≥ 0.05).