Literature DB >> 29239168

Variation in LOV Photoreceptor Activation Dynamics Probed by Time-Resolved Infrared Spectroscopy.

James N Iuliano1, Agnieszka A Gil1, Sergey P Laptenok2, Christopher R Hall2, Jinnette Tolentino Collado1, Andras Lukacs2,3, Safaa A Hag Ahmed1, Jenna Abyad1, Taraneh Daryaee1, Gregory M Greetham4, Igor V Sazanovich4, Boris Illarionov5, Adelbert Bacher6, Markus Fischer5, Michael Towrie4, Jarrod B French1, Stephen R Meech2, Peter J Tonge1.   

Abstract

The light, oxygen, voltage (LOV) domain proteins are blue light photoreceptors that utilize a noncovalently bound flavin mononucleotide (FMN) cofactor as the chromophore. The modular nature of these proteins has led to their wide adoption in the emerging fields of optogenetics and optobiology, where the LOV domain has been fused to a variety of output domains leading to novel light-controlled applications. In this work, we extend our studies of the subpicosecond to several hundred microsecond transient infrared spectroscopy of the isolated LOV domain AsLOV2 to three full-length photoreceptors in which the LOV domain is fused to an output domain: the LOV-STAS protein, YtvA, the LOV-HTH transcription factor, EL222, and the LOV-histidine kinase, LovK. Despite differences in tertiary structure, the overall pathway leading to cysteine adduct formation from the FMN triplet state is highly conserved, although there are slight variations in rate. However, significant differences are observed in the vibrational spectra and kinetics after adduct formation, which are directly linked to the specific output function of the LOV domain. While the rate of adduct formation varies by only 3.6-fold among the proteins, the subsequent large-scale structural changes in the full-length LOV photoreceptors occur over the micro- to submillisecond time scales and vary by orders of magnitude depending on the different output function of each LOV domain.

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Year:  2018        PMID: 29239168      PMCID: PMC5801046          DOI: 10.1021/acs.biochem.7b01040

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  43 in total

1.  D/H amide kinetic isotope effects reveal when hydrogen bonds form during protein folding.

Authors:  B A Krantz; L B Moran; A Kentsis; T R Sosnick
Journal:  Nat Struct Biol       Date:  2000-01

2.  The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin.

Authors:  T E Swartz; S B Corchnoy; J M Christie; J W Lewis; I Szundi; W R Briggs; R A Bogomolni
Journal:  J Biol Chem       Date:  2001-07-06       Impact factor: 5.157

3.  Blue news: NTP binding properties of the blue-light sensitive YtvA protein from Bacillus subtilis.

Authors:  Valentina Buttani; Aba Losi; Eugenia Polverini; Wolfgang Gärtner
Journal:  FEBS Lett       Date:  2006-06-15       Impact factor: 4.124

4.  Structural basis for light-dependent signaling in the dimeric LOV domain of the photosensor YtvA.

Authors:  Andreas Möglich; Keith Moffat
Journal:  J Mol Biol       Date:  2007-08-02       Impact factor: 5.469

5.  Primary photochemistry of the dark- and light-adapted states of the YtvA protein from Bacillus subtilis.

Authors:  Sang-Hun Song; Dorte Madsen; Jeroen B van der Steen; Robert Pullman; Lucy H Freer; Klaas J Hellingwerf; Delmar S Larsen
Journal:  Biochemistry       Date:  2013-10-30       Impact factor: 3.162

6.  Infrared amide I' band of the coiled coil.

Authors:  W C Reisdorf; S Krimm
Journal:  Biochemistry       Date:  1996-02-06       Impact factor: 3.162

7.  Global analysis of the thermal and chemical denaturation of the N-terminal domain of the ribosomal protein L9 in H2O and D2O. Determination of the thermodynamic parameters, deltaH(o), deltaS(o), and deltaC(o)p and evaluation of solvent isotope effects.

Authors:  B Kuhlman; D P Raleigh
Journal:  Protein Sci       Date:  1998-11       Impact factor: 6.725

8.  Ultrafast vibrational spectroscopy of the flavin chromophore.

Authors:  Minako Kondo; Jérôme Nappa; Kate L Ronayne; Allison L Stelling; Peter J Tonge; Stephen R Meech
Journal:  J Phys Chem B       Date:  2006-10-19       Impact factor: 2.991

9.  Ultrafast infrared spectroscopy of an isotope-labeled photoactivatable flavoprotein.

Authors:  Allison Haigney; Andras Lukacs; Rui-Kun Zhao; Allison L Stelling; Richard Brust; Ryu-Ryun Kim; Minako Kondo; Ian Clark; Michael Towrie; Gregory M Greetham; Boris Illarionov; Adelbert Bacher; Werner Römisch-Margl; Markus Fischer; Stephen R Meech; Peter J Tonge
Journal:  Biochemistry       Date:  2011-02-04       Impact factor: 3.162

10.  Structural basis of a phototropin light switch.

Authors:  Shannon M Harper; Lori C Neil; Kevin H Gardner
Journal:  Science       Date:  2003-09-12       Impact factor: 47.728

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  6 in total

1.  Unraveling the Mechanism of a LOV Domain Optogenetic Sensor: A Glutamine Lever Induces Unfolding of the Jα Helix.

Authors:  James N Iuliano; Jinnette Tolentino Collado; Agnieszka A Gil; Pavithran T Ravindran; Andras Lukacs; SeungYoun Shin; Helena A Woroniecka; Katrin Adamczyk; James M Aramini; Uthama R Edupuganti; Christopher R Hall; Gregory M Greetham; Igor V Sazanovich; Ian P Clark; Taraneh Daryaee; Jared E Toettcher; Jarrod B French; Kevin H Gardner; Carlos L Simmerling; Stephen R Meech; Peter J Tonge
Journal:  ACS Chem Biol       Date:  2020-09-18       Impact factor: 5.100

2.  Excited State Vibrations of Isotopically Labeled FMN Free and Bound to a Light-Oxygen-Voltage (LOV) Protein.

Authors:  James N Iuliano; Christopher R Hall; Dale Green; Garth A Jones; Andras Lukacs; Boris Illarionov; Adelbert Bacher; Markus Fischer; Jarrod B French; Peter J Tonge; Stephen R Meech
Journal:  J Phys Chem B       Date:  2020-08-10       Impact factor: 2.991

3.  Excited State Resonance Raman of Flavin Mononucleotide: Comparison of Theory and Experiment.

Authors:  Dale Green; Palas Roy; Christopher R Hall; James N Iuliano; Garth A Jones; Andras Lukacs; Peter J Tonge; Stephen R Meech
Journal:  J Phys Chem A       Date:  2021-07-09       Impact factor: 2.944

4.  Ultrafast Vibrational Energy Transfer between Protein and Cofactor in a Flavoenzyme.

Authors:  Samantha J O Hardman; Andreea I Iorgu; Derren J Heyes; Nigel S Scrutton; Igor V Sazanovich; Sam Hay
Journal:  J Phys Chem B       Date:  2020-06-15       Impact factor: 2.991

5.  Identification of the vibrational marker of tyrosine cation radical using ultrafast transient infrared spectroscopy of flavoprotein systems.

Authors:  Katalin Pirisi; Lipsa Nag; Zsuzsanna Fekete; James N Iuliano; Jinnette Tolentino Collado; Ian P Clark; Ildikó Pécsi; Pierre Sournia; Ursula Liebl; Gregory M Greetham; Peter J Tonge; Stephen R Meech; Marten H Vos; Andras Lukacs
Journal:  Photochem Photobiol Sci       Date:  2021-02-22       Impact factor: 3.982

6.  QM calculations predict the energetics and infrared spectra of transient glutamine isomers in LOV photoreceptors.

Authors:  Prokopis C Andrikopoulos; Aditya S Chaudhari; Yingliang Liu; Patrick E Konold; John T M Kennis; Bohdan Schneider; Gustavo Fuertes
Journal:  Phys Chem Chem Phys       Date:  2021-06-30       Impact factor: 3.676

  6 in total

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