Literature DB >> 29236954

NGLview-interactive molecular graphics for Jupyter notebooks.

Hai Nguyen1, David A Case1, Alexander S Rose2.   

Abstract

Summary: NGLview is a Jupyter/IPython widget to interactively view molecular structures as well as trajectories from molecular dynamics simulations. Fast and scalable molecular graphics are provided through the NGL Viewer. The widget supports showing data from the file-system, online data bases and from objects of many popular analysis libraries including mdanalysis, mdtraj, pytraj, rdkit and more. Availability and implementation: The source code is freely available under the MIT license at https://github.com/arose/nglview. Python packages are available from PyPI and bioconda. NGLview uses Python on the server-side and JavaScript on the client. The integration with Jupyter is done through the ipywidgets package. The NGL Viewer is embedded client-side to provide WebGL accelerated molecular graphics. Contact: asr.moin@gmail.com.

Entities:  

Mesh：

Year:  2018        PMID： 29236954      PMCID： PMC6031024          DOI： 10.1093/bioinformatics/btx789

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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