| Literature DB >> 29234475 |
Abstract
Scoring permutations of experimental chemical shift deviations and DFT/GIAO calculated deviations of isotropic shieldings for sets of four diastereomers can help to assign their relative configurations. This method was exercised on a set of diastereomeric Cinchona alkaloid derivatives, where 13C NMR data always identified the proper configuration. The presented approach is also an attempt to quantify the assignment by exclusion.Entities:
Keywords: GIAO; NMR; stereochemistry assignment
Year: 2017 PMID: 29234475 PMCID: PMC5704763 DOI: 10.3762/bjoc.13.245
Source DB: PubMed Journal: Beilstein J Org Chem ISSN: 1860-5397 Impact factor: 2.883
Permutation scores for the comparison of experimental 13C NMR chemical shifts deviations and DFT isotropic shieldings.a
| entry | configuration | scoreb | ||||||
| R | CP3 | overlap | RMS | |||||
| 1c | 8 | 8 | 8 | 8 | 0.881 | 0.682 | 44.7 | 0.728 |
| 2 | 8 | 8 | 8 | 8 | 0.842 | 0.662 | 42.0 | 0.830 |
| 3 | 8 | 8 | 8 | 8 | 0.835 | 0.654 | 40.3 | 0.846 |
| 4 | 8 | 8 | 8 | 8 | 0.796 | 0.634 | 37.6 | 0.936 |
| 5 | 8 | 8 | 8 | 8 | 0.169 | 0.042 | 28.2 | 1.853 |
| 6 | 8 | 8 | 8 | 8 | 0.113 | 0.022 | 26.6 | 1.913 |
| 7 | 8 | 8 | 8 | 8 | 0.097 | 0.003 | 23.9 | 1.930 |
| 8 | 8 | 8 | 8 | 8 | 0.077 | −0.056 | 22.8 | 1.951 |
| 9 | 8 | 8 | 8 | 8 | 0.059 | −0.046 | 25.0 | 1.970 |
| 10 | 8 | 8 | 8 | 8 | 0.051 | −0.067 | 22.9 | 1.978 |
| 11 | 8 | 8 | 8 | 8 | 0.042 | −0.017 | 22.4 | 1.988 |
| 12 | 8 | 8 | 8 | 8 | 0.033 | −0.057 | 25.1 | 1.997 |
| 13 | 8 | 8 | 8 | 8 | −0.026 | −0.266 | 23.4 | 2.057 |
| 14 | 8 | 8 | 8 | 8 | −0.043 | −0.267 | 24.5 | 2.073 |
| 15 | 8 | 8 | 8 | 8 | −0.068 | −0.277 | 21.1 | 2.097 |
| 16 | 8 | 8 | 8 | 8 | −0.084 | −0.277 | 22.2 | 2.113 |
| 17 | 8 | 8 | 8 | 8 | −0.093 | −0.317 | 24.9 | 2.122 |
| 18 | 8 | 8 | 8 | 8 | −0.097 | −0.335 | 22.9 | 2.126 |
| 19 | 8 | 8 | 8 | 8 | −0.114 | −0.346 | 20.1 | 2.142 |
| 20 | 8 | 8 | 8 | 8 | −0.118 | −0.364 | 18.0 | 2.146 |
| 21 | 8 | 8 | 8 | 8 | −0.805 | −0.957 | 8.5 | 2.721 |
| 22 | 8 | 8 | 8 | 8 | −0.835 | −0.986 | 6.5 | 2.744 |
| 23 | 8 | 8 | 8 | 8 | −0.842 | −0.986 | 4.7 | 2.749 |
| 24 | 8 | 8 | 8 | 8 | −0.873 | −1.015 | 2.8 | 2.772 |
aPermutations arranged by the value of Pearson correlation coefficient. bScores (cf. Table 1): R – Pearson correlation coefficient; CP3 – Smith and Goodman’s comparison parameter; overlap – aggregate overlap of datasets; RMS – root mean square difference. cCorrect assignment of configuration. For 1H NMR comparison table and for similar tables for compounds 2–7, see Supporting Information File 1.
Selected measures of comparisona.
| entry | measure | applied formula |
| 1 | MAE | |
| 2 | RMS | |
| 3 | aggregate overlap | |
| 4 | R | |
| 5 | CP1 | |
| 6 | CP3 | |
aWhere Δi are individual deviations of chemical shifts given in Equation 1 and Equation 2 for corresponding atoms, N is the total number of signals in all four isomers. For terms with division of by zero in entry 6 assume zero result. Note: when complete sets are studied there is a linear relationship between measures in entries 1 and 3, as well as 4 and 5.
Figure 1Studied tetrads 1–7.
Scheme 1Synthesis and chemical correlation for compounds of type 1 and 2.
Permutations with two highest scores for the comparison of experimental 13C NMR chemical shifts deviations and DFT isotropic shieldings.
| entry | configuration | score | ||||||
| R | CP3 | overlap | RMS | |||||
| 1a | 8 | 8 | 8 | 8 | 0.881 | 0.682 | 44.7 | 0.728 |
| 2 | 8 | 8 | 8 | 8 | 0.842 | 0.662 | 42.0 | 0.830 |
| 3a | 8 | 8 | 8 | 8 | 0.969 | 0.935 | 52.8 | 0.330 |
| 4 | 8 | 8 | 8 | 8 | 0.925 | 0.894 | 47.5 | 0.512 |
| 5a | 8 | 8 | 8 | 8 | 0.895 | 0.781 | 64.1 | 0.719 |
| 6 | 8 | 8 | 8 | 8 | 0.726 | 0.599b | 51.8 | 1.111 |
| 7a | 8 | 8 | 8 | 8 | 0.960 | 0.912 | 61.5 | 0.411 |
| 8 | 8 | 8 | 8 | 8 | 0.677 | 0.613 | 48.2 | 1.161 |
| 9a | 1 | 1 | 1 | 1 | 0.920 | 0.769 | 30.4 | 0.732 |
| 10 | 1 | 1 | 1 | 1 | 0.626 | 0.538 | 22.0 | 1.515 |
| 11a | 2 | 2 | 2 | 2 | 0.657 | 0.479 | 23.3 | 1.193 |
| 12 | 2 | 2 | 2 | 2 | 0.424 | 0.297 | 21.1 | 1.517 |
| 13a | 3 | 3 | 3 | 3 | 0.842 | 0.623 | 29.5 | 0.599 |
| 14 | 3 | 3 | 3 | 3 | 0.774 | 0.536 | 26.9 | 0.715 |
aCorrect assignment of configuration bFor this parameter a different second highest scoring permutation exists. For the details, see Supporting Information File 1.
Percentage of correctly identified configuration by highest ranking permutation for sets of three out of four diastereomers of compounds 1–7.
| measure | 13C NMR data | 1H NMR data |
| CP1 | 96% | 46% |
| CP2 | 79% | 67% |
| CP3 | 89% | 58% |
| overlap | 89% | 67% |
| RMS | 100% | 67% |
| correlation | 100% | 63% |
| MAE | 96% | 67% |