Leyla-Cann Sögütoglu1, Martin Lutz2, Hugo Meekes1, René de Gelder1, Elias Vlieg1. 1. Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands. 2. Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands.
Abstract
The crystal structure of para-methyl-l-phenylalanine at 230 K resembles that of the para-fluorinated analogue from the literature but is commensurately modulated with seven molecules in the asymmetric unit (Z' = 7). At 100 K, the superstructure loses its modulation, leading to a unit cell with Z' = 1, with clear disorder in the phenyl ring orientations. The methyl-substituent in para-methyl-l-phenylalanine has, in contrast to fluorine, no polar interactions with protons of neighboring molecules, which might allow for the well-defined modulation of the crystal structure at 230 K.
The crystal structure of para-methyl-l-phenylalanine at 230 K resembles that of the para-fluorinated analogue from the literature but is commensurately modulated with seven molecules in the asymmetric unit (Z' = 7). At 100 K, the superstructure loses its modulation, leading to a unit cell with Z' = 1, with clear disorder in the phenyl ring orientations. The methyl-substituent in para-methyl-l-phenylalanine has, in contrast to fluorine, no polar interactions with protons of neighboring molecules, which might allow for the well-defined modulation of the crystal structure at 230 K.
During the past decade, l-phenylalanine
(l-Phe)
has been studied extensively in its solid state, especially in the
framework of being a potential key to understanding the behavior of
a large class of important aromatic compounds and peptide-like systems.[1,2] The unique phenyl–phenyl interactions in crystals of this
zwitterionic amino acid give rise to a variety of subtle polymorphic
forms. The solid state of l-Phe is therefore an elegant model
for understanding the simultaneous interplay of weak hydrophobic interactions
and strong polar interactions found in amphiphilic systems. Apart
from its structural properties, l-Phe has recently gained
a significant biochemical interest as well for its possible link to
self-assembly in amyloid type systems.[3]The amphiphilic molecule l-Phe forms layered crystal
structures
as shown in Figure a, consisting of bilayers that stack through hydrophobic interactions,
whereas the bilayer itself is established through strong hydrogen
bonding between the zwitterionic amino and acid groups.[1,2] This layered crystal structure is commonly observed in hydrophobic
amino acids.[4] The aromatic side chain in l-Phe makes the hydrophobic part exquisitely rich in its ways
of stacking compared to other hydrophobic amino acids, which makes
it difficult to obtain good quality crystals. Despite the challenges
in crystallization, in the past 25 years several crystal structures
of l-Phe have been reported, some of which can emerge concomitantly
during crystal growth while differing only slightly in the hydrophobic
packing of the generic bilayers.[1,5,6]
Figure 1
(a)
Generic bilayer structure found in amphiphilic phenylalanine
and similar compounds. The bilayer and monolayer are illustrated with
the crystallographic unit cell of CSD-entry SIMPEJ.[7] Hydrophilic and hydrophobic parts are shown in blue and
pink, respectively. A bilayer is indicated by the rectangle, while
a monolayer is indicated by the shaded area. The interlayer hydrophobic
interactions are present between two bilayers, where opposite phenyls
meet, whereas the intralayer hydrophobic interactions are between
phenylalanine molecules in the same monolayer. (b) Compounds investigated
in this study together with space filling models; molecular structures
of l-Phe (left), 4-fluoro-l-phenyalalanine (middle),
and 4-methyl-l-phenylalanine (right).
(a)
Generic bilayer structure found in amphiphilic phenylalanine
and similar compounds. The bilayer and monolayer are illustrated with
the crystallographic unit cell of CSD-entry SIMPEJ.[7] Hydrophilic and hydrophobic parts are shown in blue and
pink, respectively. A bilayer is indicated by the rectangle, while
a monolayer is indicated by the shaded area. The interlayer hydrophobic
interactions are present between two bilayers, where opposite phenyls
meet, whereas the intralayer hydrophobic interactions are between
phenylalanine molecules in the same monolayer. (b) Compounds investigated
in this study together with space filling models; molecular structures
of l-Phe (left), 4-fluoro-l-phenyalalanine (middle),
and 4-methyl-l-phenylalanine (right).The electrostatic interactions between neighboring aromatic
compounds
may translate to so-called edge-to-edge and herringbone structures
in the solid-state, often observed in the crystal structure of phenyl-containing
compounds. Yet, the aromatic electrostatic interactions in l-Phe and its derivates are subject to a subtle interplay with the
zwitterionic hydrophilic part in the crystal structure. Therefore,
the terms inter- and intralayer packing are introduced in this work,
aiming for a more comprehensive description of these particular aromatic
hydrophobic interactions. The interlayer hydrophobic interactions
are present between two bilayers, where opposite phenyl groups meet,
whereas the intralayer hydrophobic interactions occur between molecules
present in the same monolayer. Figure a shows the generic bilayered structure, with the inter-
and intralayer domains indicated.In this article, we present
the newly obtained crystal structure
of para-methyl-l-phenylalanine along with
the unsubstituted variant l-Phe where we were able to reproduce
the literature structure reported by Ihlefeldt et al. (form I).[1] Structure analysis in terms of the inter- and
intralayer packing features is shown in Figure a. The structural analysis is further expanded
to the para-fluorinated variant of l-Phe as reported by In
et al.;[8]Figure b shows the molecular structures of the compounds
investigated. The hydrophobic packing resulting from methyl-substitution
turns out to be related to the natural amino acid as well as to its
fluorinated variant in a rather surprising way, giving a more comprehensive
view on the polymorphism of l-Phe and its derivatives.
Experimental Section
Sample Preparation
The growth, selection, and measurement
of single crystals was conducted in a similar way for l-Phe
and its para-methylated derivative to ensure an unbiased comparison
between the two chemically related compounds. d-para-Methyl-phenylalanine was purchased from Alfa Aesar, l-para-methyl-phenylalanine from AK Scientific, Inc., and l-Phe from Merck. Good quality single crystals of para-methyl-l-phenylalanine (Me-l-Phe) and l-Phe were obtained by vapor diffusion of isopropanol into a nearly
saturated solution at room temperature. The compounds were dissolved
in water at room temperature up to saturation, and 5 mL of the solution
was put in a vial. Before closing the vial with Parafilm, 300 μL
of distilled water was added to the solution. Ten small holes in the
Parafilm allowed the antisolvent to diffuse slowly into the solution
that was placed in a closed Erlenmeyer flask containing the antisolvent
isopropanol. Plate-like and needle-like transparent crystals of ∼200
μm size were collected after several weeks using filtration
through a Büchner funnel. The plate thickness of Me-l-Phe crystals was estimated at 10 μm, whereas l-Phe
yielded more block-like crystals with an estimated thickness of 80
μm.
Single-Crystal X-ray Diffraction
The structure determinations
for structures A and B were performed on the same crystal at different
temperatures.
X-ray Crystal Structure Determination of Structure A
C10H13NO2, F = 179.21, colorless needle, 0.54 ×
0.08 × 0.04 mm3, monoclinic, C2 (no.
5), a = 43.492(4) Å, b = 6.0810(5)
Å, c = 24.705(3) Å, β = 98.090(5)°, V = 6468.7(10) Å3, Z =
28, D = 1.288 g/cm3, μ = 0.73 mm–1. In total, 10072 reflections
were measured on a Bruker Proteum diffractometer with rotating anode
and Helios optics (λ = 1.54184 Å) at a temperature of 230(2)
K up to a resolution of (sin θ/λ)max = 0.50
Å–1. The intensities were integrated with the
Eval15 software.[9] Multiscan absorption
correction and scaling was performed with SADABS[10] (correction range 0.41–0.75). In total, 4982 reflections
were unique (Rint = 0.053), of which 2862
were observed [I > 2σ(I)].
The structure was solved using SHELXT.[11] Least-squares refinement was performed with SHELXL 2014[12] against F2 of all
reflections. Non-hydrogen atoms were refined freely with anisotropic
displacement parameters. Hydrogen atoms were introduced in calculated
positions and refined with a riding model. In total, 834 parameters
were refined with 631 restraints (concerning displacement parameters). R1/wR2 [I > 2σ(I)]: 0.0831/0.2505. R1/wR2 [all refl.]: 0.1209/0.2937. S = 1.043. Partial R-values for the main
reflections (4h + l = 7n) and the remaining ones (“satellites”): reflections
of the subcell, 1663 measured reflections; 735 unique reflections. Rint = 0.0486, ⟨I/σ⟩
= 12.074, ⟨I⟩/⟨σ⟩
= 13.185, R1 = 0.0628 for 714 Fo > 4σ(Fo), R1 = 0.0635 for all 735 data. Reflections
of
the supercell only (subcell omitted): 8409 measured reflections, 4247
unique reflections. Rint = 0.1172, ⟨I/σ⟩ = 3.543, ⟨I⟩/⟨σ⟩
= 5.379, R1 = 0.1132 for 2148 Fo > 4σ(Fo), R1 = 0.1898 for all 4247 data. Residual
electron
density between 0.26 and 0.32 e·Å–3. The absolute structure could not reliably be determined from anomalous
dispersion but was assigned according to the known chirality. Geometry
calculations and checking for higher symmetry were performed with
the PLATON program.[13]
X-ray Crystal
Structure Determination of Structure B
C10H13NO2, Fw = 179.21,
colorless needle, 0.54 × 0.08 × 0.04
mm3, monoclinic, C2 (no. 5), a = 8.7369(7) Å, b = 6.0529(8) Å, c = 17.3341(11) Å, β = 89.997(8)°, V = 916.69(15) Å3, Z =
4, D = 1.299 g/cm3, μ = 0.74 mm–1. In total, 1827 reflections
were measured on a Bruker Proteum diffractometer with rotating anode
and Helios optics (λ = 1.54184 Å) at a temperature of 100(2)
K up to a resolution of (sin θ/λ)max = 0.50
Å–1. The intensities were integrated with the
Eval15 software.[9] Multiscan absorption
correction and scaling was performed with SADABS[10] (correction range 0.39–0.75). In total, 726 reflections
were unique (Rint = 0.042) of which 698
were observed [I > 2σ(I)].
The structure was solved by direct methods using SIR-2011.[14] Least-squares refinement was performed with
SHELXL 2014[12] against F2 of all reflections. Non-hydrogen atoms were refined
freely with anisotropic displacement parameters. Hydrogen atoms were
introduced in calculated positions and refined with a riding model.
In total, 120 parameters were refined with 127 restraints (distances
and angles, flatness of phenyl ring, and displacement parameters). R1/wR2 [I > 2σ(I)]: 0.0653/0.1687. R1/wR2 [all refl.]: 0.0674/0.1708. S = 1.072. Residual electron density was between 0.19 and
0.31 e·Å–3. The absolute
structure could not reliably be determined from anomalous dispersion
but was assigned according to the known chirality. Geometry calculations
and checking for higher symmetry were performed with the PLATON program.[13] Illustrations in Figures − were created using the CCDC Mercury software.[200]
Figure 8
Structure overlay of structures A (yellow) and
B (green). Projections
along b.
Results and Discussion
l-Phenylalanine
A block-shaped transparent
single crystal of l-Phe was selected for X-ray diffraction
after inspection under a polarization microscope. Block-shaped single
crystals were found to grow concomitantly with needle-shaped single
crystals. The latter was identified as hydrates using powder X-ray
diffraction, in accordance with the literature.[6] These crystals are thought to convert into the anhydrate
when kept in solution for longer time, i.e., the needle-shaped hydrate
is a metastable form of l-Phe.The selected block-shaped
crystal was shock-frozen from room temperature to 100 K as it was
brought into the diffractometer, and a complete data set was collected
at this temperature. The structure found is identical to the l-Phe structure, form I in space group P21, recently reported by Ihlefeldt et al.[1] Therefore, only the unit cell parameters will be presented here.
It is noteworthy that Ihlefeldt et al. used vapor diffusion of acetonitrile
into a saturated acidic aqueous solution of l-Phe at room
temperature. In this study, similar quality crystals were grown via
vapor diffusion of isopropanol into a nearly saturated aqueous solution
of the pure compound.l-Phe displays a subtle form
of polymorphism, an overview
of which is given by Ihlefeldt et al.[1] Single
crystals of l-Phe were studied between 100 and 373 K with
a rate of 5 K/min using thermal stage polarization microscopy. However,
no change in polarization color was observed. Likewise, single-crystal
X-ray diffraction measurements with the same temperature gradient
did not show a significant change in the diffraction pattern, and
we therefore conclude that a solid-state phase transition from form
I to any other form of l-Phe does not occur under these conditions.
para-Methyl-l-phenylalanine
Structure
A
A transparent plate-like single crystal
of para-methyl-phenylalanine (of the d-enantiomer)
was shock-frozen from room temperature to 100 K and measured at 100
K. After structure refinement to an R-value of 5.85%,
a commensurately modulated structure with seven molecules in the asymmetric
unit was found.To examine the reproducibility of this crystal
structure and for studying a possible solid-state phase transition,
a new crystal was grown in a different batch, using new starting material.
A transparent needle-like crystal (this time of the l-enantiomer)
was shock-frozen from room temperature to 230 K for structure elucidation.
The modulated structure (Figure a) was found once again, with a final R-value of 8.31% after structure refinement. The well-reproducible
structure with Z′ = 7 is either the thermodynamically
stable crystal structure at higher temperatures or the result of the
shock freezing treatment, which causes stress (vide infra). This modulated
structure is called structure A. Layered crystals of l-Phe
and alike compounds are known to be affected significantly by stress-induced
defects. Therefore, special care was taken to mount the crystal as
stress-free as possible. Attempts to elucidate the structure at room
temperature were not successful because consolidation of the mounting
glue probably induced too much stress in the micron-thick plate-like
crystal. In this article we only report full structure determinations
of structures A and B obtained from the l-enantiomer crystal.
Figure 2
(a) Crystal
structure of para-methyl-phenylalanine
as determined from a single crystal shock-frozen from room temperature
to 230 K (structure A). (b) Crystal structure determined at 100 K
(structure B) obtained after slowly cooling the same crystal from
230 to 100 K with a rate of 5 K/min. At 100 K, a seven-times smaller
unit cell is found. Projections along b.
(a) Crystal
structure of para-methyl-phenylalanine
as determined from a single crystal shock-frozen from room temperature
to 230 K (structure A). (b) Crystal structure determined at 100 K
(structure B) obtained after slowly cooling the same crystal from
230 to 100 K with a rate of 5 K/min. At 100 K, a seven-times smaller
unit cell is found. Projections along b.
Structure B
The needle-like crystal of the l-enantiomer, leading to structure A at 230 K, was cooled down to
100 K with a rate of 5 K/min. Surprisingly, at 100 K, a seven times
smaller unit cell was found. Figure b shows the unit cell of the corresponding crystal
structure, refined to an R-value of 6.53%. This structure,
having 1 molecule in the asymmetric unit, is called structure B and
is the so-called basic structure of A, when the latter is described
as a modulated structure. In other words, structure A is a seven-fold
superstructure of B, with a modulation along the a-axis of the unit cell of structure B. Structure B shows disorder
in the orientation of the phenyl ring (see Figure ).
Figure 3
ORTEP drawing of structure B showing the disorder
in the phenyl
rings.
ORTEP drawing of structure B showing the disorder
in the phenyl
rings.
Comparison of Crystal Structures
Interlayer
Hydrophobic Packing
As shown in Figure , structures A and
B are closely related, and a detailed analysis on the differences
is therefore necessary. Figure a shows a closer view of the structures in Figure , illustrating that the interlayer
packing, i.e., the interaction between two bilayers, of structures
A and B does not change significantly during the phase transition.
Judged from Figure a, the packing within the bilayer itself is affected due to the seven-fold
modulation. This will be addressed further on in the discussion of
the intralayer packing features. Figure b provides an analogous structure overlay
of Me-l-Phe (structure A) and para-fluorophenylalanine
(F-l-Phe; CSD refcode EXAXEG), which clearly shows that F-l-Phe has the same interlayer hydrophobic packing as Me-l-Phe, recognized as an edge-to-edge like packing of the phenyl
rings. Apart from the methyl–methyl distances being larger
than the fluorine–fluorine interatomic distances, the overall
interlayer packing is unchanged in the case of the para-fluorine substituent.
Figure 4
(a) Structure overlay of Me-l-Phe (structure
A, yellow)
and Me-l-Phe (structure B, green); two complete asymmetric
units are shown for illustrating the interlayer packing. The methyl–methyl
interatomic distances of structures A and B are similar. (b) Structure
overlay of Me-l-Phe (structure A, yellow) and F-l-Phe; the methyl–methyl distances are significantly larger
than the fluorine–fluorine interatomic distances. Molecules
are represented in wire frame style, while the para substituents are
shown in ball-and-stick model for accentuating the interlayer packing.
Projections are along b of structure A.
(a) Structure overlay of Me-l-Phe (structure
A, yellow)
and Me-l-Phe (structure B, green); two complete asymmetric
units are shown for illustrating the interlayer packing. The methyl–methyl
interatomic distances of structures A and B are similar. (b) Structure
overlay of Me-l-Phe (structure A, yellow) and F-l-Phe; the methyl–methyl distances are significantly larger
than the fluorine–fluorine interatomic distances. Molecules
are represented in wire frame style, while the para substituents are
shown in ball-and-stick model for accentuating the interlayer packing.
Projections are along b of structure A.The interlayer packing feature of unsubstituted l-Phe,
however, is recognized as a herringbone structure compared to the
hydrophobic packing of the para-substituted variants; Figure a shows the unit cells of the
investigated compounds. Figure b,c gives a more detailed view, showing the structure overlay
of Me-l-Phe (structure A) with F-l-Phe and l-Phe, respectively, up to three bilayers. From Figure we conclude that the para-fluorinated compound
is isostructural with the presently obtained para-methylated compound,
except for a smaller density and a slight difference in phenyl orientation. Table gives structural
details for the three related compounds.
Figure 5
(a) Overview of the unit
cells of l-Phe, F-l-Phe,
and Me-l-Phe (structures A and B), with projections along b. Molecular conformers are colored based on symmetry equivalence.
(b) Structure overlay of Me-l-Phe (structure B, green) and
F-l-Phe. (c) Structure overlay of Me-l-Phe (structure
B, green) and l-Phe. Projections are along b of the Me-l-Phe unit cell.
Table 1
Crystallographic Unit Cells of l-Phe and
Para-Substituted Derivates
this work
In et al.[8]
this
work (Z′ = 7)
this work (Z′ = 1)
compd
l-Phe
F-l-Phe
Me-l-Phe
Me-d-Phe
Me-l-Phe
temperature (K)
100
230
100
100
space group
P21
P21
C2
C2
C2
a
8.8066(15)
8.8132(10)
43.492(4)
43.385(2)
8.7369(7)
b
6.0049(10)
5.9830(7)
6.0810(5)
6.0701(3)
6.0529(8)
c
31.117(5)
16.0460(18)
24.705(3)
24.6027(13)
17.3341(11)
β
96.844(5)
91.349(2)
98.090(5)
97.728(3)
89.997(8)
volumea
816.92
845.86
924.10
917.17
916.89
Z′
4
2
7
7
1
Effective volume for four molecules.
(a) Overview of the unit
cells of l-Phe, F-l-Phe,
and Me-l-Phe (structures A and B), with projections along b. Molecular conformers are colored based on symmetry equivalence.
(b) Structure overlay of Me-l-Phe (structure B, green) and
F-l-Phe. (c) Structure overlay of Me-l-Phe (structure
B, green) and l-Phe. Projections are along b of the Me-l-Phe unit cell.Effective volume for four molecules.It should be noted from Figure that all compounds are perfectly superimposable
in
the rigid hydrophilic region, meaning that the hydrophilic part retains
the same geometry regardless of the hydrophobic part. The hydrogen
bonding network in the hydrophilic part is categorized as “hydrogen
bond motif III” by Görbitz et al.,[4] and we conclude that the hydrophilic packing of l-Phe remains intact when the compound is para-substituted.
Intralayer
Hydrophobic Packing
The phenyl–phenyl
geometry within the monolayers, i.e., the intralayer packing, is shown
in Figure for Me-l-Phe. The orientation of the phenyl ring is indicated by the
red and black lines for structures A and B, respectively, showing
the subtle change in the intralayer packing going from structure A
to structure B.
Figure 6
Top view on the hydrophobic layer showing intralayer packing
features
for (a) structure A and (b) structure B. Phenyl orientations are accentuated
by solid lines parallel to the phenyl ring, shown in space-filling
representation. For clarity the para-methyl substituent
and phenyl protons on both sides are shown in yellow for structure
A and green for structure B. The methyl substituent of the seven molecules
in the asymmetric unit of structure A is colored blue, while the same
molecules are colored blue as well in the basic structure B. (c) Overlay
of structures A and B with their phenyl orientations accentuated by
red and black solid lines, respectively.
Top view on the hydrophobic layer showing intralayer packing
features
for (a) structure A and (b) structure B. Phenyl orientations are accentuated
by solid lines parallel to the phenyl ring, shown in space-filling
representation. For clarity the para-methyl substituent
and phenyl protons on both sides are shown in yellow for structure
A and green for structure B. The methyl substituent of the seven molecules
in the asymmetric unit of structure A is colored blue, while the same
molecules are colored blue as well in the basic structure B. (c) Overlay
of structures A and B with their phenyl orientations accentuated by
red and black solid lines, respectively.An extension of the analysis, illustrated in Figure , shows that the packing of
the monolayer
in structure A has common features with both intralayer packings of
F-l-Phe and l-Phe: rows of phenyl rings are rotated
45° with respect to each other (indicated with red blocks). In
addition, the packing of structure A shows intralayer packing features
of the basic structure B as well, with phenyl rings oriented more
parallel to each other (indicated with green blocks). Figure clearly shows that Me-l-Phe has a stronger tendency to stack phenyl rings parallel
within the same monolayer than l-Phe and F-l-Phe.
Figure 7
Top view
on the hydrophobic side of the monolayer for compounds
compiled in Table . Phenyl orientations are accentuated by solid lines parallel to
the phenyl ring, while the methyl carbon in Me-l-Phe is colored
for clarity.
Top view
on the hydrophobic side of the monolayer for compounds
compiled in Table . Phenyl orientations are accentuated by solid lines parallel to
the phenyl ring, while the methyl carbon in Me-l-Phe is colored
for clarity.The latter observation
is intriguing in terms of the interplay
between interlayer and intralayer hydrophobic interactions. The steric
effect, caused by a specific phenyl substituent in the center of the
hydrophobic part (i.e., the interlayer packing), as well as the substituent-specific
electron density in the aromatic ring (determining the intralayer
packing) accounts for the overall structure and a possible modulation.
A particular case of the latter is also found in para- and meta-fluorinated
derivatives of l-Phe reported by In et al. where the authors
suggest a hydrogen bond-like interaction between fluorine and electron-poor
aromatic protons, resulting in specific phenyl geometries in the hydrophobic
part of the bilayer. There is no indication for a modulation in the
room-temperature crystal structures of para-, meta-, and ortho-fluorinated
phenylalanine. All crystal structures obtained after recrystallization
at room temperature are unmodulated.[8,15] The modulation
in Me-l-Phe might be related to the interplay between the
substituent-specific electrostatic aromatic interaction (mainly intralayer)
and the substituent-specific steric contribution (mainly interlayer),
leading to the observed seven-fold modulation. The absence of relatively
strong electrostatic interactions between the hydrophobic layers allows
for relaxation of structural stress, possibly induced by the thermal
treatment (shock freezing). The disorder in the phenyl ring orientations
found in structure B might be due to domain formation upon cooling
the sample slowly to 100 K. The domain walls then lead to pinning
of the modulation wave and loss of structural coherence.
Modulation
and Relation between Structures A and B
To transform the
average structure (T = 100 K) into
the superstructure (T = 230 K), the following matrix
holds (determinant = 7):For the back-transformation
the inverse matrix
can be applied (determinant = 1/7):The superstructure at 230 K can alternatively
be described in (3 + 1) superspace. The cell parameters are then a = 8.7260(8) Å, b = 6.0852(5) Å, c = 17.4252(17) Å, β = 90.202(5)°. The q-vector is (4/7, 0, 1/7), or in decimal notation (0.5716(1),
0.0000(1), 0.1424(3)). The space group is C2(a0g)0.Structure A is a seven-fold
superstructure of B. The modulation changes as one moves from one
molecule to another along aB in terms
of the basic structure B. This is clearly visible in the structure
overlay shown in Figure .Structure overlay of structures A (yellow) and
B (green). Projections
along b.The seven independent molecules
of the superstructure can be fitted
with a quaternion fit.[16] Each molecule
is considered independently, and crystal packing effects are ignored.
A modulation can be mainly seen in the orientation of the phenyl rings
(see Figure , Table ).
Figure 9
Quaternion fit of the
seven independent molecules in structure
A. The fit is only based on C1–C4, N, and O atoms. Hydrogen
atoms are omitted in the drawing for clarity. The plot was created
with the PLATON software.[13]
Table 2
Torsion Angles in the Seven Independent
Molecules in Structure A
molecule
1
2
3
4
5
6
7
C5–C4–C3–C2
56.7(14)
78.1(13)
82.9(13)
94.2(12)
58.3(13)
80.0(12)
90.7(12)
C9–C4–C3–C2
–124.1(12)
–100.8(12)
–94.6(13)
–88.9(13)
–127.5(11)
–98.5(12)
–92.7(13)
C4–C3–C2–C1
67.0(12)
61.5(12)
64.3(13)
68.0(12)
65.8(12)
60.9(13)
71.0(12)
C4–C3–C2–N
–176.2(8)
179.5(9)
–176.0(8)
–171.1(9)
–176.8(8)
179.7(9)
–172.1(8)
C3–C2–C1–O1
–112.9(9)
–113.4(9)
–112.8(9)
–107.8(10)
–112.0(9)
–111.9(10)
–111.5(9)
C3–C2–C1–O2
68.7(10)
68.1(10)
71.8(10)
74.6(10)
69.6(10)
66.7(10)
71.4(10)
Quaternion fit of the
seven independent molecules in structure
A. The fit is only based on C1–C4, N, and O atoms. Hydrogen
atoms are omitted in the drawing for clarity. The plot was created
with the PLATON software.[13]Averaging structure A takes the packing effects into
account. The
structure overlay of the seven independent molecules in structure
A then shows that there are slight deviations in the amino acid part
of the molecule, but the main modulation remains in the orientation
of the phenyl groups as shown in Figure .
Figure 10
Averaging of the seven independent molecules
in structure A according
to the transformation matrix (eq ). Hydrogen atoms are omitted in the drawing.
Averaging of the seven independent molecules
in structure A according
to the transformation matrix (eq ). Hydrogen atoms are omitted in the drawing.Apparently, structure A loses its modulation and
adapts a higher
symmetry with one molecule in the asymmetric unit when slowly cooled
from 230 to 100 K. It is remarkable that structure B does not reconvert
to structure A upon heating the crystal with the same rate back to
230 K. It must be noted that solid-state phase transitions of amino
acids are strongly subject to hysteresis as a result of defects and
temperature treatment.[17,18]The irreversible phase
transition has also been studied for Me-l-Phe using thermal
stage polarization microscopy for single
crystals and using differential scanning calorimetry (DSC) for powders.
Single crystals were cooled to 100 K starting from room temperature
with a rate of 5 K/min in polarization microscopy. Inhomogeneous color
effects were observed, but the temperature at which this was found
varied. Therefore, no exact temperature could be identified for the
phase transition in these measurements, and we conclude that the subtle
phase transition has no significant effect on the optical properties
of the crystal. The phase transition was likewise not detectable in
DSC measurements on powders. Therefore, the subtle phase transition
is only properly observed in single-crystal X-ray diffraction measurements,
but akin to phase transitions in comparable amphiphilic systems,[18,19] the study of the solid-state phase transition demands careful and
time-consuming repetitions of crystallization and diffraction measurements.A final remark should be made on the observed gain of symmetry
at 100 K, which is seemingly counterintuitive with the commonly observed
loss of symmetry at lower temperatures. For example, para-chloro-benzamide (Cl-Bzmd) is a comparable compound becoming three-fold
modulated at temperatures below 123 K with respect to the structure
at temperatures above 123 K.[20] This compound
is reported in literature and is, to the best of our knowledge, the
only compound comparable to our amphiphilic bilayered system undergoing
structural modulation due to a phenyl substituent.
Conclusion
The crystal structure of para-methyl-l-phenylalanine at 230 K is a (3 + 1)-commensurately modulated superstructure
with seven molecules in the asymmetric unit (structure A), resembling
the para-fluorinated variant of l-Phe (EXAXEG) present in
the CSD. Structure A loses its modulation at 100 K, leading to a structure
B, which is the basic structure of A, with one molecule in the asymmetric
unit.The methyl-substituent in para-methyl-l-phenylalanine has, in contrast to fluorine, no polar interaction
with protons of neighboring molecules, which may allow for the well-defined
modulation of the crystal structure at 230 K. This modulation responds
to temperature, as concluded from diffraction measurements. Analysis
of intralayer packing features shows that para-methyl-l-phenylalanine has a greater tendency to stack parallel within
the monolayer, compared to l-Phe and its para-fluorinated
variant. The latter is probably the result of both the substituent-specific
electrostatic aromatic interaction (mainly intralayer) and the substituent-specific
steric contribution (mainly interlayer), leading to the observed seven-fold
modulation.We have shown that a well-defined modulation can
be evoked in l-Phe by introducing a methyl substituent on
the para position.
The observed rich variety of structures for l-Phe and its
derivatives, now also including a modulated structure, shows that
the phase behavior of this family of compounds, and in particular
its dependence on the temperature treatment, offers a challenging
field for further research.
Authors: Franziska Stefanie Ihlefeldt; Fredrik Bjarte Pettersen; Aidan von Bonin; Malgorzata Zawadzka; Carl Henrik Görbitz Journal: Angew Chem Int Ed Engl Date: 2014-10-21 Impact factor: 15.336
Authors: Joost A van den Ende; Mireille M H Smets; Daniël T de Jong; Sander J T Brugman; Bernd Ensing; Paul T Tinnemans; Hugo Meekes; Herma M Cuppen Journal: Faraday Discuss Date: 2015-04-16 Impact factor: 4.008
Authors: Estelle Mossou; Susana C M Teixeira; Edward P Mitchell; Sax A Mason; Lihi Adler-Abramovich; Ehud Gazit; V Trevor Forsyth Journal: Acta Crystallogr C Struct Chem Date: 2014-02-22 Impact factor: 1.172