| Literature DB >> 29233108 |
Yanting Zhu1, Xin Yan1, Cui Zhai1, Lan Yang1, Manxiang Li2.
Abstract
BACKGROUND: Previous studies have indicated that chitinase 3-like 1 (CHI3L1) gene rs4950928 polymorphism and acidic mammalian chitinase (AMCase or CHIA) gene rs10494132 polymorphism are associated with the risk of asthma. However, the results are inconsistent because of small sample size and varied ethnicity and age in studies. Therefore, a systematic meta-analysis was important to clarify the effect of CHI3L1 rs4950928 polymorphism and CHIA rs10494132 variant on asthma risk.Entities:
Keywords: Asthma; CHI3L1; CHIA; Gene polymorphism; Meta-analysis
Mesh:
Substances:
Year: 2017 PMID: 29233108 PMCID: PMC5726029 DOI: 10.1186/s12890-017-0515-2
Source DB: PubMed Journal: BMC Pulm Med ISSN: 1471-2466 Impact factor: 3.317
Main characteristics of all eligible studies in this meta-analysis
| Author | Year | Country | Ethnicity | Age group | Cases | Controls | Genotyping method |
|---|---|---|---|---|---|---|---|
| rs4950928 | |||||||
| Li [ | 2015 | China | Asian | Children | 316 | 297 | Mass Array |
| James [ | 2016 | Sweden | Caucasian | Adults | 111 | 57 | TaqMan |
| Ober [ | 2008 | USA | Caucasian | Children | 344 | 294 | TaqMan |
| Ober [ | 2008 | USA | Caucasian | Mixed | 99 | 197 | TaqMan |
| Ramphul [ | 2015 | Mauritius | African | Children | 192 | 189 | TaqMan |
| rs10494132 | |||||||
| Chatterjee [ | 2008 | India | Caucasian | Adults | 270 | 292 | EMSAs |
| Chatterjee [ | 2008 | India | Caucasian | Adults | 150 | 101 | EMSAs |
| Huang [ | 2013 | China | Asian | Children | 158 | 198 | Mass Array |
| Chen [ | 2014 | China | Asian | Adults | 150 | 101 | Mass Array |
| Shao [ | 2017 | China | Asian | Children | 68 | 52 | Mass Array |
NA Not available, EMSAs Electrophoretic mobility shift assays
Fig. 1Flowchart of study selection procedure
Distributions of CHI3L1 rs4950928 and CHIA rs10494132 polymorphisms among asthmatic patients and controls
| Study | Cases | Controls |
| ||||
| rs4950928 | GG | GC | CC | GG | GC | CC | |
| Li [ | 13 | 111 | 192 | 9 | 71 | 217 | 0.288 |
| James [ | 8 | 34 | 69 | 3 | 14 | 40 | 0.254 |
| Ober [ | 17 | 100 | 227 | 24 | 120 | 150 | 1.000 |
| Ober [ | 5 | 25 | 69 | 7 | 80 | 111 | 0.103 |
| Ramphul [ | 6 | 64 | 122 | 5 | 63 | 121 | 0.339 |
| rs10494132 | TT | TC | CC | TT | TC | CC | |
| Chatterjee [ | 150 | 85 | 30 | 166 | 97 | 24 | 0.075 |
| Chatterjee [ | 91 | 43 | 14 | 55 | 38 | 6 | 0.868 |
| Huang [ | 130 | 26 | 2 | 138 | 50 | 10 | 0.063 |
| Chen [ | 91 | 43 | 16 | 55 | 38 | 8 | 0.691 |
| Shao [ | 30 | 22 | 16 | 23 | 17 | 12 | 0.023 |
HWE Hardy- Weinberg equilibrium
Meta-analysis of CHI3L1 rs4950928 and CHIA rs10494132 polymorphisms and asthma
| Subgroup | Genetic model | Genotype/Allele | Type of model | Heterogeneity | Test of Association | |||
|---|---|---|---|---|---|---|---|---|
| I2 |
| OR | 95% CI |
| ||||
| rs4950928 | ||||||||
| Overall | Recessive model | GG vs. GC + CC | F | 0.00% | 0.430 | 0.946 | 0.626–1.428 | 0.791 |
| Dominant model | GG + GC vs. CC | R | 86.70% | 0.000 | 0.917 | 0.767–1.097 | 0.342 | |
| Codominant model | GC vs. CC | R | 85.80% | 0.000 | 0.915 | 0.759–1.103 | 0.351 | |
| Homozygote model | GG vs. CC | F | 39.10% | 0.160 | 0.889 | 0.588–1.346 | 0.579 | |
| Allele model | G vs. C | R | 84.90% | 0.000 | 0.933 | 0.802–1.085 | 0.369 | |
| Caucasians | Recessive model | GG vs. GC + CC | F | 21.40% | 0.128 | 0.794 | 0.475–1.327 | 0.378 |
| Dominant model | GG + GC vs. CC | R | 70.20% | 0.035 | 0.621 | 0.484–0.797 | 0.000 | |
| Codominant model | GC vs. CC | R | 65.70% | 0.054 | 0.612 | 0.470–0.796 | 0.000 | |
| Homozygote model | GGvs. CC | F | 40.40% | 0.187 | 0.675 | 0.402–1.134 | 0.138 | |
| Allele model | G vs. C | R | 68.70% | 0.041 | 0.696 | 0.567–0.856 | 0.001 | |
| Children | Recessive model | GG vs. GC + CC | F | 28.00% | 0.249 | 0.844 | 0.529-1.346 | 0.476 |
| Dominant model | GG + GC vs. CC | R | 91.90% | 0.000 | 0.955 | 0.782–1.166 | 0.651 | |
| Codominant model | GC + CC | R | 90.90% | 0.000 | 0.970 | 0.788-1.196 | 0.777 | |
| Homozygote model | GG vs. CC | R | 64.00% | 0.062 | 0.797 | 0.499-1.275 | 0.345 | |
| Allele model | G vs. C | R | 91.30% | 0.000 | 0.946 | 0.799–1.120 | 0.522 | |
| rs10494132 | ||||||||
| Overall | Recessive model | TT vs. TC + CC | F | 35.80% | 0.182 | 1.212 | 0.981–1.497 | 0.075 |
| Dominant model | TT + TC vs. CC | F | 21.80% | 0.276 | 0.857 | 0.597–1.230 | 0.403 | |
| Codominant model | TC vs. CC | F | 0.00% | 0.455 | 0.748 | 0.504–1.109 | 0.149 | |
| Homozygote model | TT vs. CC | F | 24.70% | 0.257 | 0.916 | 0.630–1.331 | 0.646 | |
| Allele model | T vs. C | R | 57.90% | 0.050 | 1.094 | 0.924–1.297 | 0.298 | |
| Asians | Recessive model | TT vs. TC + CC | F | 29.80% | 0.240 | 1.476 | 1.071–2.032 | 0.017 |
| Dominant model | TT + TC vs. CC | F | 48.10% | 0.145 | 1.125 | 0.654–1.933 | 0.671 | |
| Codominant model | TC vs. CC | F | 24.60% | 0.266 | 0.926 | 0.507–1.691 | 0.802 | |
| Homozygote model | TT vs. CC | F | 48.90% | 0.141 | 1.249 | 0.709-2.199 | 0.441 | |
| Allele model | T vs. C | R | 64.00% | 0.062 | 1.326 | 1.024–1.717 | 0.032 | |
| Children | Recessive model | TT vs. TC + CC | F | 30.60% | 0.263 | 1.472 | 1.067–2.030 | 0.019 |
| Dominant model | TT + TC vs. CC | F | 53.00% | 0.119 | 1.101 | 0.629–1.927 | 0.737 | |
| Codominant model | TC vs. CC | F | 34.70% | 0.216 | 0.903 | 0.485–1.681 | 0.748 | |
| Homozygote model | TT vs. CC | F | 53.30% | 0.117 | 1.217 | 0.679–2.184 | 0.510 | |
| Allele model | T vs. C | R | 64.90% | 0.058 | 1.320 | 1.016–1.713 | 0.037 | |
OR Odds ratio, CI Confidence interval, P P-value of heterogeneity test, P P-value of pooled effect, R Random effect model, F Fixed effect model
Fig. 2Forest plot of the association between CHI3L1 rs4950928 polymorphism and asthma risk by ethnicity stratification under (a) the dominant model (GG + GC vs. CC), (b) the codominant model (GC vs. CC) and (c) the allele model (G vs. C)
Fig. 3Forest plot of the association between CHIA rs10494132 polymorphism and asthma risk stratified by ethnicity under (a) the recessive model (TT vs. TC + CC) and (b) the allele model (T vs. C)
Fig. 4Forest plot of the association between CHIA rs10494132 polymorphism and asthma risk by age stratification under (a) the recessive model (TT vs. TC + CC) and (b) the allele model (T vs. C)
Fig. 5Begg’s funnel plots of publication bias for the association between CHI3L1 rs4950928 (a) and CHIA rs10494132 (b) polymorphisms and asthma risk under the recessive models (GG vs. GC + CC; TT vs. TC + CC)
Results of publication bias test
| Subgroup | Genetic model | Genotype/Allele | Begg’s test | Egger’s test | ||
|---|---|---|---|---|---|---|
| z value |
| t value |
| |||
| rs4950928 | ||||||
| Overall | Recessive model | GG vs. GC + CC | 0.000 | 1.000 | 2.450 | 0.092 |
| Dominant model | GG + GC vs. CC | 0.490 | 0.624 | 0.180 | 0.866 | |
| Codominant model | GCvs.CC | 0.490 | 0.624 | 0.060 | 0.958 | |
| Homozygote model | GG vs. CC | 0.980 | 0.327 | 1.880 | 0.157 | |
| Allele model | Gvs.C | 0.490 | 0.624 | 0.440 | 0.690 | |
| rs10494132 | ||||||
| Overall | Recessive model | TTvs. TC + CC | 0.240 | 0.806 | 0.770 | 0.500 |
| Dominant model | TT + TCvs. CC | 0.980 | 0.327 | 1.750 | 0.178 | |
| Codominant model | TCvs. CC | 0.490 | 0.624 | 1.050 | 0.373 | |
| Homozygote model | TT vs. CC | 1.470 | 0.142 | 2.200 | 0.116 | |
| Allele model | T vs. C | 0.490 | 0.624 | 1.200 | 0.317 | |