Literature DB >> 29226559

Nature's genetic screens: using genome-wide association studies for effector discovery.

Andrea Sánchez-Vallet1, Fanny E Hartmann2, Thierry C Marcel3, Daniel Croll4.   

Abstract

Mesh:

Year:  2018        PMID: 29226559      PMCID: PMC6638067          DOI: 10.1111/mpp.12592

Source DB:  PubMed          Journal:  Mol Plant Pathol        ISSN: 1364-3703            Impact factor:   5.663


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  10 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

Review 2.  Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana.

Authors:  Joy Bergelson; Fabrice Roux
Journal:  Nat Rev Genet       Date:  2010-12       Impact factor: 53.242

3.  Population Genomics for Understanding Adaptation in Wild Plant Species.

Authors:  Detlef Weigel; Magnus Nordborg
Journal:  Annu Rev Genet       Date:  2015-10-02       Impact factor: 16.830

4.  TASSEL: software for association mapping of complex traits in diverse samples.

Authors:  Peter J Bradbury; Zhiwu Zhang; Dallas E Kroon; Terry M Casstevens; Yogesh Ramdoss; Edward S Buckler
Journal:  Bioinformatics       Date:  2007-06-22       Impact factor: 6.937

5.  A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements.

Authors:  Fanny E Hartmann; Andrea Sánchez-Vallet; Bruce A McDonald; Daniel Croll
Journal:  ISME J       Date:  2017-01-24       Impact factor: 10.302

6.  GAPIT: genome association and prediction integrated tool.

Authors:  Alexander E Lipka; Feng Tian; Qishan Wang; Jason Peiffer; Meng Li; Peter J Bradbury; Michael A Gore; Edward S Buckler; Zhiwu Zhang
Journal:  Bioinformatics       Date:  2012-07-13       Impact factor: 6.937

7.  Mixed linear model approach adapted for genome-wide association studies.

Authors:  Zhiwu Zhang; Elhan Ersoz; Chao-Qiang Lai; Rory J Todhunter; Hemant K Tiwari; Michael A Gore; Peter J Bradbury; Jianming Yu; Donna K Arnett; Jose M Ordovas; Edward S Buckler
Journal:  Nat Genet       Date:  2010-03-07       Impact factor: 38.330

8.  A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene.

Authors:  Ziming Zhong; Thierry C Marcel; Fanny E Hartmann; Xin Ma; Clémence Plissonneau; Marcello Zala; Aurélie Ducasse; Johann Confais; Jérôme Compain; Nicolas Lapalu; Joëlle Amselem; Bruce A McDonald; Daniel Croll; Javier Palma-Guerrero
Journal:  New Phytol       Date:  2017-02-06       Impact factor: 10.151

9.  Quantitative, Image-Based Phenotyping Methods Provide Insight into Spatial and Temporal Dimensions of Plant Disease.

Authors:  Andrew M Mutka; Sarah J Fentress; Joel W Sher; Jeffrey C Berry; Chelsea Pretz; Dmitri A Nusinow; Rebecca Bart
Journal:  Plant Physiol       Date:  2016-07-21       Impact factor: 8.340

Review 10.  Genome-Wide Association Studies In Plant Pathosystems: Toward an Ecological Genomics Approach.

Authors:  Claudia Bartoli; Fabrice Roux
Journal:  Front Plant Sci       Date:  2017-05-23       Impact factor: 5.753

  10 in total
  11 in total

Review 1.  Infection Strategies and Pathogenicity of Biotrophic Plant Fungal Pathogens.

Authors:  Johannes Mapuranga; Na Zhang; Lirong Zhang; Jiaying Chang; Wenxiang Yang
Journal:  Front Microbiol       Date:  2022-06-02       Impact factor: 6.064

2.  Mapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments.

Authors:  Anik Dutta; Fanny E Hartmann; Carolina Sardinha Francisco; Bruce A McDonald; Daniel Croll
Journal:  ISME J       Date:  2021-01-15       Impact factor: 10.302

Review 3.  Tackling microbial threats in agriculture with integrative imaging and computational approaches.

Authors:  Nikhil Kumar Singh; Anik Dutta; Guido Puccetti; Daniel Croll
Journal:  Comput Struct Biotechnol J       Date:  2020-12-29       Impact factor: 7.271

4.  Reciprocal adaptation of rice and Xanthomonas oryzae pv. oryzae: cross-species 2D GWAS reveals the underlying genetics.

Authors:  Fan Zhang; Zhiqiang Hu; Zhichao Wu; Jialing Lu; Yingyao Shi; Jianlong Xu; Xiyin Wang; Jinpeng Wang; Fan Zhang; Mingming Wang; Xiaorong Shi; Yanru Cui; Casiana Vera Cruz; Dalong Zhuo; Dandan Hu; Min Li; Wensheng Wang; Xiuqin Zhao; Tianqing Zheng; Binying Fu; Jauhar Ali; Yongli Zhou; Zhikang Li
Journal:  Plant Cell       Date:  2021-08-31       Impact factor: 11.277

5.  An automated and combinative method for the predictive ranking of candidate effector proteins of fungal plant pathogens.

Authors:  Darcy A B Jones; Lina Rozano; Johannes W Debler; Ricardo L Mancera; Paula M Moolhuijzen; James K Hane
Journal:  Sci Rep       Date:  2021-10-05       Impact factor: 4.379

Review 6.  New-Generation Sequencing Technology in Diagnosis of Fungal Plant Pathogens: A Dream Comes True?

Authors:  Maria Aragona; Anita Haegi; Maria Teresa Valente; Luca Riccioni; Laura Orzali; Salvatore Vitale; Laura Luongo; Alessandro Infantino
Journal:  J Fungi (Basel)       Date:  2022-07-16

Review 7.  Proteinaceous effector discovery and characterization in filamentous plant pathogens.

Authors:  Claire Kanja; Kim E Hammond-Kosack
Journal:  Mol Plant Pathol       Date:  2020-08-07       Impact factor: 5.663

Review 8.  Finding the needle in a haystack: Mapping antifungal drug resistance in fungal pathogen by genomic approaches.

Authors:  Dominique Sanglard
Journal:  PLoS Pathog       Date:  2019-01-31       Impact factor: 6.823

9.  A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici.

Authors:  Thomas Badet; Ursula Oggenfuss; Leen Abraham; Bruce A McDonald; Daniel Croll
Journal:  BMC Biol       Date:  2020-02-11       Impact factor: 7.431

10.  Local adaptation drives the diversification of effectors in the fungal wheat pathogen Parastagonospora nodorum in the United States.

Authors:  Jonathan K Richards; Eva H Stukenbrock; Jessica Carpenter; Zhaohui Liu; Christina Cowger; Justin D Faris; Timothy L Friesen
Journal:  PLoS Genet       Date:  2019-10-18       Impact factor: 5.917

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