Literature DB >> 29226473

Contributions to nucleosome dynamics in chromatin from interactive propagation of phosphorylation/acetylation and inducible histone lysine basicities.

Lois R Manning1, James M Manning1.   

Abstract

The effect of phosphorylation on the basicities of amines in histone H3 peptides and their acetylation kinetics is probed with a mild chemical acetylating agent. Phosphorylation of Ser-10 lowers the rate of chemical acetylation of Lys-9, Lys-14, and Lys-18 by methyl acetyl phosphate in that order consistent with a higher pKa of these Lys residues induced by phosphorylation; basicities increase up to 3 pKa units as a function of distance from Ser-10 phosphate. Enzymic acetylation of Lys residues with high pKa values in nucleosomes is also expected to be enhanced by phosphorylation, consistent with the known mechanism involving binding of protonated amines to N-acetyltransferases; fetal hemoglobin has a related linkage of increased basicity at a specific site, its acetylation, and a resulting decrease in subunit interaction strength. In the absence of a phosphate on Ser-10, the amines of Lys-9, Lys-14, and Lys-18 have lowered pKa values. Chemical acetylation of glycine and glycinamide have analogous kinetic profiles to the histone peptides but the phosphate inductive effect in histone H3 is more potent since the linkage between phosphorylation and acetylation is propagated with a range extending 9-10 amino acids in either direction from the phosphorylation site enhancing protonation of amino groups. We conclude that lysine amine basicities in histone tails are not static but inducible and variable due to a dynamic and immediate interaction between phosphorylation/acetylation that may contribute to inactive heterochromatin by compaction through such Ser phosphate-Lys amine electrostatic interactions and their relaxation by acetylation in euchromatin.
© 2017 The Protein Society.

Entities:  

Keywords:  acetylation; chromatin; epigenetics; histone; methyl acetyl phosphate; nucleosome; phosphorylation

Mesh:

Substances:

Year:  2018        PMID: 29226473      PMCID: PMC5818737          DOI: 10.1002/pro.3359

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  21 in total

1.  The acetylation state of human fetal hemoglobin modulates the strength of its subunit interactions: long-range effects and implications for histone interactions in the nucleosome.

Authors:  L R Manning; J M Manning
Journal:  Biochemistry       Date:  2001-02-13       Impact factor: 3.162

2.  The language of covalent histone modifications.

Authors:  B D Strahl; C D Allis
Journal:  Nature       Date:  2000-01-06       Impact factor: 49.962

Review 3.  Signaling network model of chromatin.

Authors:  Stuart L Schreiber; Bradley E Bernstein
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

4.  Structure of the histone acetyltransferase Hat1: a paradigm for the GCN5-related N-acetyltransferase superfamily.

Authors:  R N Dutnall; S T Tafrov; R Sternglanz; V Ramakrishnan
Journal:  Cell       Date:  1998-08-21       Impact factor: 41.582

5.  Use of selectively trypsinized nucleosome core particles to analyze the role of the histone "tails" in the stabilization of the nucleosome.

Authors:  J Ausio; F Dong; K E van Holde
Journal:  J Mol Biol       Date:  1989-04-05       Impact factor: 5.469

6.  N-terminal acetylation and protonation of individual hemoglobin subunits: position-dependent effects on tetramer strength and cooperativity.

Authors:  Makoto Ashiuchi; Takeshi Yagami; Ronald J Willey; Julio C Padovan; Brian T Chait; Anthony Popowicz; Lois R Manning; James M Manning
Journal:  Protein Sci       Date:  2005-06       Impact factor: 6.725

7.  Rapid histone H3 phosphorylation in response to growth factors, phorbol esters, okadaic acid, and protein synthesis inhibitors.

Authors:  L C Mahadevan; A C Willis; M J Barratt
Journal:  Cell       Date:  1991-05-31       Impact factor: 41.582

8.  Mechanism of site-directed protein cross-linking. protein-directed selectivity in reactions of hemoglobin with aryl trimesates.

Authors:  R Kluger; V D Stefano
Journal:  J Org Chem       Date:  2000-01-14       Impact factor: 4.354

9.  Exchange of subunit interfaces between recombinant adult and fetal hemoglobins. Evidence for a functional inter-relationship among regions of the tetramer.

Authors:  A Dumoulin; L R Manning; W T Jenkins; R M Winslow; J M Manning
Journal:  J Biol Chem       Date:  1997-12-12       Impact factor: 5.157

10.  The functional, oxygen-linked chloride binding sites of hemoglobin are contiguous within a channel in the central cavity.

Authors:  H Ueno; J M Manning
Journal:  J Protein Chem       Date:  1992-04
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  1 in total

1.  Top-Down Proteomics of Medicinal Cannabis.

Authors:  Delphine Vincent; Steve Binos; Simone Rochfort; German Spangenberg
Journal:  Proteomes       Date:  2019-09-24
  1 in total

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