Literature DB >> 29224807

Construction of mass spectra database and diagnosis algorithm for head and neck squamous cell carcinoma.

Kei Ashizawa1, Kentaro Yoshimura2, Hisashi Johno2, Tomohiro Inoue3, Ryohei Katoh3, Satoshi Funayama4, Kaname Sakamoto1, Sen Takeda2, Keisuke Masuyama1, Tomokazu Matsuoka5, Hiroki Ishii6.   

Abstract

OBJECTIVES: Intraoperative identification of tumor margins is essential to achieving complete tumor resection. However, the process of intraoperative pathological diagnosis involves cumbersome procedures, such as preparation of cryosections and microscopic examination, thus requiring more than 30 min. Moreover, intraoperative diagnoses made by examining cryosections are occasionally inconsistent with postoperative diagnoses made by examining paraffin-embedded sections because the former are of poorer quality. We sought to establish a more rapid accurate method of intraoperative assessment.
MATERIALS AND METHODS: A diagnostic algorithm of head and neck squamous cell carcinoma (HNSCC) using machine learning was constructed by mass spectra obtained from 15 non-cancerous and 19 HNSCC specimens by probe electrospray ionization mass spectrometry (PESI-MS). The clinical validity of this system was evaluated using intraoperative specimens of HNSCC and normal mucosa.
RESULTS: A total of 114 and 141 mass spectra were acquired from non-cancerous and cancerous specimens, respectively, using both positive- and negative-ion modes of PESI-MS. These data were fed into partial least squares-logistic regression (PLS-LR) to discriminate tumor-specific spectral patterns. Leave-one-patient-out cross validation of this algorithm in positive- and negative-ion modes showed accuracies in HNSCC diagnosis of 90.48% and 95.35%, respectively. In intraoperative specimens of HNSCC, this algorithm precisely defined the borders of the cancerous regions; these corresponded with those determined by examining histologic sections. The procedure took approximately 5 min.
CONCLUSION: This diagnostic system, based on machine learning, enables accurate discrimination of cancerous regions and has the potential to provide rapid intraoperative assessment of HNSCC margins.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Ambient mass spectrometry; Diagnosis; Head and neck squamous cell carcinoma; Machine learning; Partial least squares logistic regression; Probe electrospray ionization; Real-time analysis

Mesh:

Year:  2017        PMID: 29224807     DOI: 10.1016/j.oraloncology.2017.11.008

Source DB:  PubMed          Journal:  Oral Oncol        ISSN: 1368-8375            Impact factor:   5.337


  9 in total

1.  Malignancy prediction among tissues from Oral SCC patients including neck invasions: a 1H HRMAS NMR based metabolomic study.

Authors:  Anup Paul; Shatakshi Srivastava; Raja Roy; Akshay Anand; Kushagra Gaurav; Nuzhat Husain; Sudha Jain; Abhinav A Sonkar
Journal:  Metabolomics       Date:  2020-03-11       Impact factor: 4.290

2.  Using probe electrospray ionization mass spectrometry and machine learning for detecting pancreatic cancer with high performance.

Authors:  Wen Y Chung; Elon Correa; Kentaro Yoshimura; Ming-Chu Chang; Ashley Dennison; Sen Takeda; Yu-Ting Chang
Journal:  Am J Transl Res       Date:  2020-01-15       Impact factor: 4.060

Review 3.  The contribution of artificial intelligence to reducing the diagnostic delay in oral cancer.

Authors:  Betul Ilhan; Pelin Guneri; Petra Wilder-Smith
Journal:  Oral Oncol       Date:  2021-03-09       Impact factor: 5.337

Review 4.  Artificial Intelligence-based methods in head and neck cancer diagnosis: an overview.

Authors:  Hanya Mahmood; Muhammad Shaban; Nasir Rajpoot; Syed A Khurram
Journal:  Br J Cancer       Date:  2021-04-19       Impact factor: 9.075

5.  New strategy for evaluating pancreatic tissue specimens from endoscopic ultrasound-guided fine needle aspiration and surgery.

Authors:  Seiichiro Fukuhara; Eisuke Iwasaki; Tomohiko Iwano; Yujiro Machida; Hiroki Tamagawa; Shintaro Kawasaki; Takashi Seino; Takahiro Yokose; Yutaka Endo; Kentaro Yoshimura; Kazuhiro Kashiwagi; Minoru Kitago; Haruhiko Ogata; Sen Takeda; Takanori Kanai
Journal:  JGH Open       Date:  2021-07-17

6.  High-performance Collective Biomarker from Liquid Biopsy for Diagnosis of Pancreatic Cancer Based on Mass Spectrometry and Machine Learning.

Authors:  Tomohiko Iwano; Kentaro Yoshimura; Genki Watanabe; Ryo Saito; Sho Kiritani; Hiromichi Kawaida; Takeshi Moriguchi; Tasuku Murata; Koretsugu Ogata; Daisuke Ichikawa; Junichi Arita; Kiyoshi Hasegawa; Sen Takeda
Journal:  J Cancer       Date:  2021-11-04       Impact factor: 4.207

7.  Breast cancer diagnosis based on lipid profiling by probe electrospray ionization mass spectrometry.

Authors:  T Iwano; K Yoshimura; S Inoue; T Odate; K Ogata; S Funatsu; H Tanihata; T Kondo; D Ichikawa; S Takeda
Journal:  Br J Surg       Date:  2020-04-04       Impact factor: 6.939

8.  A new rapid diagnostic system with ambient mass spectrometry and machine learning for colorectal liver metastasis.

Authors:  Sho Kiritani; Kentaro Yoshimura; Junichi Arita; Takashi Kokudo; Hiroyuki Hakoda; Meguri Tanimoto; Takeaki Ishizawa; Nobuhisa Akamatsu; Junichi Kaneko; Sen Takeda; Kiyoshi Hasegawa
Journal:  BMC Cancer       Date:  2021-03-10       Impact factor: 4.430

Review 9.  Endoscopic Ultrasound-Guided Sampling for Personalized Pancreatic Cancer Treatment.

Authors:  Eisuke Iwasaki; Seiichiro Fukuhara; Masayasu Horibe; Shintaro Kawasaki; Takashi Seino; Yoichi Takimoto; Hiroki Tamagawa; Yujiro Machida; Atsuto Kayashima; Marin Noda; Hideyuki Hayashi; Takanori Kanai
Journal:  Diagnostics (Basel)       Date:  2021-03-08
  9 in total

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