Literature DB >> 29223005

The emerging role of systems biology for engineering protein production in CHO cells.

Chih-Chung Kuo1, Austin Wt Chiang2, Isaac Shamie3, Mojtaba Samoudi2, Jahir M Gutierrez1, Nathan E Lewis4.   

Abstract

To meet the ever-growing demand for effective, safe, and affordable protein therapeutics, decades of intense efforts have aimed to maximize the quantity and quality of recombinant proteins produced in CHO cells. Bioprocessing innovations and cell engineering efforts have improved product titer; however, uncharacterized cellular processes and gene regulatory mechanisms still hinder cell growth, specific productivity, and protein quality. Herein, we summarize recent advances in systems biology and data-driven approaches aiming to unravel how molecular pathways, cellular processes, and extrinsic factors (e.g. media supplementation) influence recombinant protein production. In particular, as the available omics data for CHO cells continue to grow, predictive models and screens will be increasingly used to unravel the biological drivers of protein production, which can be used with emerging genome editing technologies to rationally engineer cells to further control the quantity, quality and affordability of many biologic drugs.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29223005      PMCID: PMC5988649          DOI: 10.1016/j.copbio.2017.11.015

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  14 in total

1.  Proteogenomic Annotation of Chinese Hamsters Reveals Extensive Novel Translation Events and Endogenous Retroviral Elements.

Authors:  Shangzhong Li; Seong Won Cha; Kelly Heffner; Deniz Baycin Hizal; Michael A Bowen; Raghothama Chaerkady; Robert N Cole; Vijay Tejwani; Prashant Kaushik; Michael Henry; Paula Meleady; Susan T Sharfstein; Michael J Betenbaugh; Vineet Bafna; Nathan E Lewis
Journal:  J Proteome Res       Date:  2019-05-08       Impact factor: 4.466

2.  Engineering death resistance in CHO cells for improved perfusion culture.

Authors:  Michael A MacDonald; Matthias Nöbel; Verónica S Martínez; Kym Baker; Evan Shave; Peter P Gray; Stephen Mahler; Trent Munro; Lars K Nielsen; Esteban Marcellin
Journal:  MAbs       Date:  2022 Jan-Dec       Impact factor: 6.440

3.  Expression and characterization of soluble epitope-defined major histocompatibility complex (MHC) from stable eukaryotic cell lines.

Authors:  Amanda L Wooster; Trevor S Anderson; Devin B Lowe
Journal:  J Immunol Methods       Date:  2018-10-19       Impact factor: 2.303

4.  Combating viral contaminants in CHO cells by engineering innate immunity.

Authors:  Austin W T Chiang; Shangzhong Li; Benjamin P Kellman; Gouri Chattopadhyay; Yaqin Zhang; Chih-Chung Kuo; Jahir M Gutierrez; Faezeh Ghazi; Hana Schmeisser; Patrice Ménard; Sara Petersen Bjørn; Bjørn G Voldborg; Amy S Rosenberg; Montserrat Puig; Nathan E Lewis
Journal:  Sci Rep       Date:  2019-06-20       Impact factor: 4.379

5.  Multiplex secretome engineering enhances recombinant protein production and purity.

Authors:  Stefan Kol; Daniel Ley; Tune Wulff; Marianne Decker; Johnny Arnsdorf; Sanne Schoffelen; Anders Holmgaard Hansen; Tanja Lyholm Jensen; Jahir M Gutierrez; Austin W T Chiang; Helen O Masson; Bernhard O Palsson; Bjørn G Voldborg; Lasse Ebdrup Pedersen; Helene Faustrup Kildegaard; Gyun Min Lee; Nathan E Lewis
Journal:  Nat Commun       Date:  2020-04-20       Impact factor: 14.919

6.  Inclusion of maintenance energy improves the intracellular flux predictions of CHO.

Authors:  Diana Széliová; Jerneja Štor; Isabella Thiel; Marcus Weinguny; Michael Hanscho; Gabriele Lhota; Nicole Borth; Jürgen Zanghellini; David E Ruckerbauer; Isabel Rocha
Journal:  PLoS Comput Biol       Date:  2021-06-11       Impact factor: 4.779

7.  Establishment and validation of a pseudovirus neutralization assay for SARS-CoV-2.

Authors:  Jianhui Nie; Qianqian Li; Jiajing Wu; Chenyan Zhao; Huan Hao; Huan Liu; Li Zhang; Lingling Nie; Haiyang Qin; Meng Wang; Qiong Lu; Xiaoyu Li; Qiyu Sun; Junkai Liu; Changfa Fan; Weijin Huang; Miao Xu; Youchun Wang
Journal:  Emerg Microbes Infect       Date:  2020-12       Impact factor: 7.163

8.  Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion.

Authors:  Jahir M Gutierrez; Amir Feizi; Shangzhong Li; Thomas B Kallehauge; Hooman Hefzi; Lise M Grav; Daniel Ley; Deniz Baycin Hizal; Michael J Betenbaugh; Bjorn Voldborg; Helene Faustrup Kildegaard; Gyun Min Lee; Bernhard O Palsson; Jens Nielsen; Nathan E Lewis
Journal:  Nat Commun       Date:  2020-01-02       Impact factor: 14.919

9.  Downscaling screening cultures in a multifunctional bioreactor array-on-a-chip for speeding up optimization of yeast-based lactic acid bioproduction.

Authors:  Damiano Totaro; Mario Rothbauer; Matthias G Steiger; Torsten Mayr; Hsiang-Yu Wang; Yu-Sheng Lin; Michael Sauer; Martin Altvater; Peter Ertl; Diethard Mattanovich
Journal:  Biotechnol Bioeng       Date:  2020-04-06       Impact factor: 4.530

Review 10.  Process Analytical Technologies and Data Analytics for the Manufacture of Monoclonal Antibodies.

Authors:  Murali K Maruthamuthu; Scott R Rudge; Arezoo M Ardekani; Michael R Ladisch; Mohit S Verma
Journal:  Trends Biotechnol       Date:  2020-08-21       Impact factor: 19.536

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