Literature DB >> 29220077

Using the Arabidopsis Information Resource (TAIR) to Find Information About Arabidopsis Genes.

Leonore Reiser1, Shabari Subramaniam1, Donghui Li1, Eva Huala1.   

Abstract

The Arabidopsis Information Resource (TAIR; http://arabidopsis.org) is a comprehensive Web resource of Arabidopsis biology for plant scientists. TAIR curates and integrates information about genes, proteins, gene function, orthologs, gene expression, mutant phenotypes, biological materials such as clones and seed stocks, genetic markers, genetic and physical maps, genome organization, images of mutant plants, protein sub-cellular localizations, publications, and the research community. The various data types are extensively interconnected and can be accessed through a variety of Web-based search and display tools. This unit primarily focuses on some basic methods for searching, browsing, visualizing, and analyzing information about Arabidopsis genes and genome. Additionally, we describe how members of the community can share data using TAIR's Online Annotation Submission Tool (TOAST), in order to make their published research more accessible and visible. © 2017 by John Wiley & Sons, Inc.
Copyright © 2017 John Wiley & Sons, Inc.

Entities:  

Keywords:  Arabidopsis; bioinformatics; data mining; databases; genomics

Mesh:

Substances:

Year:  2017        PMID: 29220077     DOI: 10.1002/cpbi.36

Source DB:  PubMed          Journal:  Curr Protoc Bioinformatics        ISSN: 1934-3396


  15 in total

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Journal:  Database (Oxford)       Date:  2022-05-25       Impact factor: 4.462

2.  ABI5 binding protein2 inhibits ABA responses during germination without ABA-INSENSITIVE5 degradation.

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3.  AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

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4.  Plant Reactome: a knowledgebase and resource for comparative pathway analysis.

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Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

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6.  TaDrAp1 and TaDrAp2, Partner Genes of a Transcription Repressor, Coordinate Plant Development and Drought Tolerance in Spelt and Bread Wheat.

Authors:  Lyudmila Zotova; Nasgul Shamambaeva; Katso Lethola; Badr Alharthi; Valeriya Vavilova; Svetlana E Smolenskaya; Nikolay P Goncharov; Akhylbek Kurishbayev; Satyvaldy Jatayev; Narendra K Gupta; Sunita Gupta; Carly Schramm; Peter A Anderson; Colin L D Jenkins; Kathleen L Soole; Yuri Shavrukov
Journal:  Int J Mol Sci       Date:  2020-11-05       Impact factor: 5.923

7.  Molecular Traits and Functional Analysis of the CLAVATA3/Endosperm Surrounding Region-Related Small Signaling Peptides in Three Species of Gossypium Genus.

Authors:  Huan Lin; Wei Wang; Xiugui Chen; Zhenting Sun; Xiulan Han; Shuai Wang; Yan Li; Wuwei Ye; Zujun Yin
Journal:  Front Plant Sci       Date:  2021-06-04       Impact factor: 5.753

8.  Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase.

Authors:  Valerio Arnaboldi; Daniela Raciti; Kimberly Van Auken; Juancarlos N Chan; Hans-Michael Müller; Paul W Sternberg
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

9.  Unraveling candidate genes underlying biomass digestibility in elephant grass (Cenchrus purpureus).

Authors:  João Romero do Amaral Santos de Carvalho Rocha; Tiago de Souza Marçal; Felipe Vicentino Salvador; Adriel Carlos da Silva; Pedro Crescencio Souza Carneiro; Marcos Deon Vilela de Resende; Jailton da Costa Carneiro; Ana Luisa Sousa Azevedo; Jorge Fernando Pereira; Juarez Campolina Machado
Journal:  BMC Plant Biol       Date:  2019-12-10       Impact factor: 4.215

10.  GelFAP: Gene Functional Analysis Platform for Gastrodia elata.

Authors:  Jiaotong Yang; Qiaoqiao Xiao; Jiao Xu; Lingling Da; Lanping Guo; Luqi Huang; Yue Liu; Wenying Xu; Zhen Su; Shiping Yang; Qi Pan; Weike Jiang; Tao Zhou
Journal:  Front Plant Sci       Date:  2020-10-22       Impact factor: 5.753

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