Literature DB >> 29219804

Pseudooceanicola lipolyticus sp. nov., a marine alphaproteobacterium, reclassification of Oceanicola flagellatus as Pseudooceanicola flagellatus comb. nov. and emended description of the genus Pseudooceanicola.

Meng-Meng Huang1,2, Li-Li Guo1,3, Yue-Hong Wu1, Qi-Liang Lai4, Zong-Ze Shao4, Chun-Sheng Wang1, Min Wu3, Xue-Wei Xu1.   

Abstract

A Gram-stain-negative, rod-shaped bacterium, designated 157T, was isolated from seawater collected from the Philippine Sea. Cells of strain 157T grew in medium containing 0.5-10.0 % NaCl (w/v, optimum 3 %), at pH 6.0-8.5 (optimum 7.0) and at 15-40 °C (optimum 30 °C). Tweens 20, 40 and 80 as well as urea were hydrolysed. The 16S rRNA gene sequence of strain 157T had a high sequence similarity with respect to Pseudooceanicola marinus AZO-CT (97.2 %), and exhibited less than 97.0 % sequence similarity to other type strains of the species with validly published names. Phylogenetic analyses revealed that strain 157T fell within a cluster comprising the Pseudooceanicola species and formed a coherent clade with P. marinus AZO-CT and Pseudooceanicola antarcticus Ar-45T. Strain 157T exhibited average nucleotide identity values of 74.5 and 74.9 % to P. marinus LMG 23705T and P. antarcticus Ar-45T, respectively. In silico DNA-DNA hybridization analysis revealed that strain 157T shared 20.2 % DNA relatedness with P. marinus LMG 23705T and 20.6 % with P. antarcticus Ar-45T, respectively. The sole isoprenoid quinone was ubiquinone 10. The major fatty acids were summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c), C19 : 0 cyclo ω8c, C16 : 0 2-OH and C16 : 0. The major polar lipids were phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, one unidentified aminolipid and one unidentified glycolipid. The DNA G+C content was 64.6 mol%. According to the phylogenetic, chemotaxonomic and phenotypic data, it represents a novel species of the genus Pseudooceanicola, for which the name Pseudooceanicolalipolyticus is proposed. The type strain is 157T (=KCTC 52654T=MCCC 1K03317T). In addition, the description of the genus Pseudooceanicola is emended and Oceanicola flagellatus is reclassified as Pseudooceanicola flagellatus comb. nov., with the type strain DY470T (=CGMCC 1.12664T=LMG 27871T) proposed.

Entities:  

Keywords:  Alphaproteobacteria; Pseudooceanicola; Rhodobacteraceae; phylogenetic analysis; whole genome sequencing

Mesh:

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Year:  2017        PMID: 29219804     DOI: 10.1099/ijsem.0.002521

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  4 in total

1.  Degradation of 1,4-Dioxane by Xanthobacter sp. YN2.

Authors:  Fang Ma; Yingning Wang; Jixian Yang; Haijuan Guo; Delin Su; Lan Yu
Journal:  Curr Microbiol       Date:  2021-02-06       Impact factor: 2.188

2.  Alterinioella nitratireducens gen. nov., sp. nov., Isolated from Seawater in the West Pacific Ocean.

Authors:  Yan-Hui Kong; Cong Sun; Li-Li Guo; Lin Xu; Yue-Hong Wu; Xue-Wei Xu
Journal:  Curr Microbiol       Date:  2021-04-23       Impact factor: 2.188

3.  Marinomonas vulgaris sp. nov., a marine bacterium isolated from seawater in a coastal intertidal zone of Zhoushan island.

Authors:  Jun-Jie Ying; Yuan-Chun Fang; Yong-Lian Ye; Zhi-Cheng Wu; Lin Xu; Bing-Nan Han; Cong Sun
Journal:  Arch Microbiol       Date:  2021-07-28       Impact factor: 2.552

4.  Roseobacters in a Sea of Poly- and Paraphyly: Whole Genome-Based Taxonomy of the Family Rhodobacteraceae and the Proposal for the Split of the "Roseobacter Clade" Into a Novel Family, Roseobacteraceae fam. nov.

Authors:  Kevin Y H Liang; Fabini D Orata; Yann F Boucher; Rebecca J Case
Journal:  Front Microbiol       Date:  2021-06-25       Impact factor: 5.640

  4 in total

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