Literature DB >> 29214493

Virgibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi.

Young Joon Oh1, Ja-Young Jang1, Seul Ki Lim1, Min-Sung Kwon1, Jieun Lee1, NamHee Kim1, Mi-Young Shin1,2, Hyo Kyeong Park1, Myung-Ji Seo3, Hak-Jong Choi4.   

Abstract

A Gram-stain-positive, halophilic, rod-shaped, non-motile, spore forming bacterium, strain NKC1-2T, was isolated from kimchi, a Korean fermented food. Comparative analysis based on 16S rRNA gene sequence demonstrated that the isolated strain was a species of the genus Virgibacillus. Strain NKC1-2T exhibited high level of 16S rRNA gene sequence similarity with the type strains of Virgibacillus xinjiangensis SL6-1T (96.9%), V. sediminis YIM kkny3T (96.8%), and V. salarius SA-Vb1T (96.7%). The isolate grew at pH 6.5-10.0 (optimum, pH 8.5-9.0), 0.0-25.0% (w/v) NaCl (optimum, 10-15% NaCl), and 15-50°C (optimum, 37°C). The major menaquinone in the strain was menaquinone-7, and the main peptidoglycan of the strain was meso-diaminopimelic acid. The predominant fatty acids of the strain were iso-C14:0, anteisio-C15:0, iso- C15:0, and iso-C16:0 (other components were < 10.0%). The polar lipids consisted of diphosphatidylglycerol and phosphatidylglycerol. The genomic DNA G + C content of NKC1-2T was 42.5 mol%. On the basis of these findings, strain NKC1-2T is proposed as a novel species in the genus Virgibacillus, for which the name Virgibacillus kimchii sp. nov. is proposed (=KACC 19404T =JCM 32284T). The type strain of Virgibacillus kimchii is NKC1-2T.

Entities:  

Keywords:  Virgibacillus kimchii sp. nov.; halophile; kimchi; taxonomy

Mesh:

Substances:

Year:  2017        PMID: 29214493     DOI: 10.1007/s12275-017-7386-3

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  26 in total

1.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

2.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

3.  Demonstration of a COOH-terminal extension on equine lutropin by means of a common acid-labile bond in equine lutropin and equine chorionic gonadotropin.

Authors:  G R Bousfield; H Sugino; D N Ward
Journal:  J Biol Chem       Date:  1985-08-15       Impact factor: 5.157

4.  Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus salibacillus to Virgibacillus, as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus.

Authors:  Jeroen Heyrman; Niall A Logan; Hans-Jürgen Busse; An Balcaen; Liesbeth Lebbe; Marina Rodriguez-Diaz; Jean Swings; Paul De Vos
Journal:  Int J Syst Evol Microbiol       Date:  2003-03       Impact factor: 2.747

5.  Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with L-lysine in the cell wall, and reclassification of Bacillus marinus Rüger 1983 . as mMrinibacillus marinus gen nov., comb. nov.

Authors:  J H Yoon; N Weiss; K C Lee; I S Lee; K H Kang; Y H Park
Journal:  Int J Syst Evol Microbiol       Date:  2001-11       Impact factor: 2.747

6.  Virgibacillus xinjiangensis sp. nov., isolated from a Salt Lake of Xin-jiang Province in China.

Authors:  Che Ok Jeon; Jeong Myeong Kim; Dong-Jin Park; Li-Hua Xu; Cheng-Lin Jiang; Chang-Jin Kim
Journal:  J Microbiol       Date:  2010-02-04       Impact factor: 3.422

7.  Gracilibacillus kimchii sp. nov., a halophilic bacterium isolated from kimchi.

Authors:  Young Joon Oh; Hae-Won Lee; Seul Ki Lim; Min-Sung Kwon; Jieun Lee; Ja-Young Jang; Hae Woong Park; Young-Do Nam; Myung-Ji Seo; Hak-Jong Choi
Journal:  J Microbiol       Date:  2016-08-31       Impact factor: 3.422

8.  The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small.

Authors:  M Nei; S Kumar; K Takahashi
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

9.  Virgibacillus flavescens sp. nov., isolated from marine sediment.

Authors:  De-Chao Zhang; Peter Schumann; Jiang Wu; Luís França; Kathrin Neuner; Rosa Margesin
Journal:  Int J Syst Evol Microbiol       Date:  2015-12-16       Impact factor: 2.747

10.  Lentibacillus kimchii sp. nov., an extremely halophilic bacterium isolated from kimchi, a Korean fermented vegetable.

Authors:  Young Joon Oh; Hae-Won Lee; Seul Ki Lim; Min-Sung Kwon; Jieun Lee; Ja-Young Jang; Jong Hee Lee; Hae Woong Park; Young-Do Nam; Myung-Ji Seo; Seong Woon Roh; Hak-Jong Choi
Journal:  Antonie Van Leeuwenhoek       Date:  2016-03-22       Impact factor: 2.271

View more
  4 in total

1.  Genotypical Relationship Between Human and Poultry Strains of Campylobacter jejuni.

Authors:  Roberta Torres de Melo; Carolyne Ferreira Dumont; Raquelline Figueiredo Braz; Guilherme Paz Monteiro; Micaela Guidotti Takeuchi; Eduarda Cristina Alves Lourenzatto; Jandra Pacheco Dos Santos; Daise Aparecida Rossi
Journal:  Curr Microbiol       Date:  2021-06-05       Impact factor: 2.188

2.  Salicibibacter kimchii gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium in the family Bacillaceae, isolated from kimchi.

Authors:  Ja-Young Jang; Young Joon Oh; Seul Ki Lim; Hyo Kyeong Park; Changsu Lee; Joon Yong Kim; Mi-Ai Lee; Hak-Jong Choi
Journal:  J Microbiol       Date:  2018-10-25       Impact factor: 3.422

3.  Salicibibacter halophilus sp. nov., a moderately halophilic bacterium isolated from kimchi.

Authors:  Young Joon Oh; Joon Yong Kim; Hyo Kyeong Park; Ja-Young Jang; Seul Ki Lim; Min-Sung Kwon; Hak-Jong Choi
Journal:  J Microbiol       Date:  2019-10-28       Impact factor: 3.422

4.  Mining biosynthetic gene clusters in Virgibacillus genomes.

Authors:  Ghofran Othoum; Salim Bougouffa; Ameerah Bokhari; Feras F Lafi; Takashi Gojobori; Heribert Hirt; Ivan Mijakovic; Vladimir B Bajic; Magbubah Essack
Journal:  BMC Genomics       Date:  2019-09-03       Impact factor: 3.969

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.