Literature DB >> 29200271

The Next Frontier: Quantitative Biochemistry in Living Cells.

Alf Honigmann1, André Nadler1.   

Abstract

Researchers striving to convert biology into an exact science foremost rely on structural biology and biochemical reconstitution approaches to obtain quantitative data. However, cell biological research is moving at an ever-accelerating speed into areas where these approaches lose much of their edge. Intrinsically unstructured proteins and biochemical interaction networks composed of interchangeable, multivalent, and unspecific interactions pose unique challenges to quantitative biology, as do processes that occur in discrete cellular microenvironments. Here we argue that a conceptual change in our way of conducting biochemical experiments is required to take on these new challenges. We propose that reconstitution of cellular processes in vitro should be much more focused on mimicking the cellular environment in vivo, an approach that requires detailed knowledge of the material properties of cellular compartments, essentially requiring a material science of the cell. In a similar vein, we suggest that quantitative biochemical experiments in vitro should be accompanied by corresponding experiments in vivo, as many newly relevant cellular processes are highly context-dependent. In essence, this constitutes a call for chemical biologists to convert their discipline from a proof-of-principle science to an area that could rightfully be called quantitative biochemistry in living cells. In this essay, we discuss novel techniques and experimental strategies with regard to their potential to fulfill such ambitious aims.

Mesh:

Year:  2017        PMID: 29200271     DOI: 10.1021/acs.biochem.7b01060

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  3 in total

1.  Optical manipulation of sphingolipid biosynthesis using photoswitchable ceramides.

Authors:  Matthijs Kol; Ben Williams; Henry Toombs-Ruane; Henri G Franquelim; Sergei Korneev; Christian Schroeer; Petra Schwille; Dirk Trauner; Joost Cm Holthuis; James A Frank
Journal:  Elife       Date:  2019-02-05       Impact factor: 8.140

2.  A Coumarin Triflate Reagent Enables One-Step Synthesis of Photo-Caged Lipid Metabolites for Studying Cell Signaling.

Authors:  Nicolai Wagner; Milena Schuhmacher; Annett Lohmann; André Nadler
Journal:  Chemistry       Date:  2019-11-04       Impact factor: 5.236

3.  Live-cell lipid biochemistry reveals a role of diacylglycerol side-chain composition for cellular lipid dynamics and protein affinities.

Authors:  Milena Schuhmacher; Andreas T Grasskamp; Pavel Barahtjan; Nicolai Wagner; Benoit Lombardot; Jan S Schuhmacher; Pia Sala; Annett Lohmann; Ian Henry; Andrej Shevchenko; Ünal Coskun; Alexander M Walter; André Nadler
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-25       Impact factor: 11.205

  3 in total

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