Literature DB >> 29197673

After the deluge: mining Staphylococcus aureus genomic data for clinical associations and host-pathogen interactions.

Richard Copin1, Bo Shopsin2, Victor J Torres3.   

Abstract

The genome of Staphylococcus aureus has rapidly become one the most frequently sequenced among bacteria, with more than 40000 genome sequences uploaded to public databases. Computational resources required for analysis and quality assessment have lagged behind accumulation of sequence data. Improved analytic pipelines, in combination with the development of customized S. aureus reference databases, can be used to inform S. aureus biology and potentially predict clinical outcome. Here, we review the currently available data about S. aureus genome in public databases, and discuss their potential utility for understanding S. aureus evolution. Also discussed are ways to overcome challenges to the application of whole-genome sequencing data for prevention and management of S. aureus disease.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID： 29197673      PMCID： PMC5862737          DOI： 10.1016/j.mib.2017.11.014

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN： 1369-5274            Impact factor:   7.934


  44 in total

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Journal:  Infect Immun       Date:  2013-12-30       Impact factor: 3.441

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Journal:  Lancet       Date:  2002-03-02       Impact factor: 79.321

3.  Involvement of Panton-Valentine leukocidin-producing Staphylococcus aureus in primary skin infections and pneumonia.

Authors:  G Lina; Y Piémont; F Godail-Gamot; M Bes; M O Peter; V Gauduchon; F Vandenesch; J Etienne
Journal:  Clin Infect Dis       Date:  1999-11       Impact factor: 9.079

4.  Pathogen-triggered activation of plasmacytoid dendritic cells induces IL-10-producing B cells in response to Staphylococcus aureus.

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Journal:  J Immunol       Date:  2013-01-16       Impact factor: 5.422

Review 5.  Genomic variation and evolution of Staphylococcus aureus.

Authors:  Jodi A Lindsay
Journal:  Int J Med Microbiol       Date:  2009-10-07       Impact factor: 3.473

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Authors:  Michael M Mwangi; Shang Wei Wu; Yanjiao Zhou; Krzysztof Sieradzki; Herminia de Lencastre; Paul Richardson; David Bruce; Edward Rubin; Eugene Myers; Eric D Siggia; Alexander Tomasz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-21       Impact factor: 11.205

7.  Predicting the virulence of MRSA from its genome sequence.

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Authors:  Jakob Haaber; Jørgen J Leisner; Marianne T Cohn; Arancha Catalan-Moreno; Jesper B Nielsen; Henrik Westh; José R Penadés; Hanne Ingmer
Journal:  Nat Commun       Date:  2016-11-07       Impact factor: 14.919

10.  Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting.

Authors:  Steven Y C Tong; Matthew T G Holden; Emma K Nickerson; Ben S Cooper; Claudio U Köser; Anne Cori; Thibaut Jombart; Simon Cauchemez; Christophe Fraser; Vanaporn Wuthiekanun; Janjira Thaipadungpanit; Maliwan Hongsuwan; Nicholas P Day; Direk Limmathurotsakul; Julian Parkhill; Sharon J Peacock
Journal:  Genome Res       Date:  2014-12-09       Impact factor: 9.043
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  11 in total

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Journal:  mBio       Date:  2022-05-25       Impact factor: 7.786

2.  Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection.

Authors:  Deena R Altman; Mitchell J Sullivan; Bo Shopsin; Harm van Bakel; Kieran I Chacko; Divya Balasubramanian; Theodore R Pak; William E Sause; Krishan Kumar; Robert Sebra; Gintaras Deikus; Oliver Attie; Hannah Rose; Martha Lewis; Yi Fulmer; Ali Bashir; Andrew Kasarskis; Eric E Schadt; Anthony R Richardson; Victor J Torres
Journal:  Infect Immun       Date:  2018-09-21       Impact factor: 3.441

3.  Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital.

Authors:  Serena Manara; Edoardo Pasolli; Daniela Dolce; Novella Ravenni; Silvia Campana; Federica Armanini; Francesco Asnicar; Alessio Mengoni; Luisa Galli; Carlotta Montagnani; Elisabetta Venturini; Omar Rota-Stabelli; Guido Grandi; Giovanni Taccetti; Nicola Segata
Journal:  Genome Med       Date:  2018-11-13       Impact factor: 11.117

4.  A comparative genomic analysis between methicillin-resistant Staphylococcus aureus strains of hospital acquired and community infections in Yunnan province of China.

Authors:  Feng Liao; Zhishuo Mo; Wenpeng Gu; Wen Xu; Xiaoqing Fu; Yunhui Zhang
Journal:  BMC Infect Dis       Date:  2020-02-13       Impact factor: 3.090

5.  Using genomics to understand meticillin- and vancomycin-resistant Staphylococcus aureus infections.

Authors:  Stefano G Giulieri; Steven Y C Tong; Deborah A Williamson
Journal:  Microb Genom       Date:  2020-01

6.  A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak.

Authors:  Mitchell J Sullivan; Deena R Altman; Kathleen Gibbs; Harm van Bakel; Kieran I Chacko; Brianne Ciferri; Elizabeth Webster; Theodore R Pak; Gintaras Deikus; Martha Lewis-Sandari; Zenab Khan; Colleen Beckford; Angela Rendo; Flora Samaroo; Robert Sebra; Ramona Karam-Howlin; Tanis Dingle; Camille Hamula; Ali Bashir; Eric Schadt; Gopi Patel; Frances Wallach; Andrew Kasarskis
Journal:  J Clin Microbiol       Date:  2019-11-22       Impact factor: 5.948

7.  Genomic analyses of Staphylococcus aureus clonal complex 45 isolates does not distinguish nasal carriage from bacteraemia.

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Journal:  Microb Genom       Date:  2020-07-15

Review 8.  Interplay between ESKAPE Pathogens and Immunity in Skin Infections: An Overview of the Major Determinants of Virulence and Antibiotic Resistance.

Authors:  Gustavo Henrique Rodrigues Vale de Macedo; Gabrielle Damasceno Evangelista Costa; Elane Rodrigues Oliveira; Glauciane Viera Damasceno; Juliana Silva Pereira Mendonça; Lucas Dos Santos Silva; Vitor Lopes Chagas; José Manuel Noguera Bazán; Amanda Silva Dos Santos Aliança; Rita de Cássia Mendonça de Miranda; Adrielle Zagmignan; Andrea de Souza Monteiro; Luís Cláudio Nascimento da Silva
Journal:  Pathogens       Date:  2021-02-02

9.  Hierarchy of human IgG recognition within the Staphylococcus aureus immunome.

Authors:  Emily E Radke; Stuart M Brown; Adam J Pelzek; Yi Fulmer; David N Hernandez; Victor J Torres; Isaac P Thomsen; William K Chiang; Andy O Miller; Bo Shopsin; Gregg J Silverman
Journal:  Sci Rep       Date:  2018-09-05       Impact factor: 4.379

10.  Exploiting species specificity to understand the tropism of a human-specific toxin.

Authors:  K M Boguslawski; A N McKeown; C J Day; K A Lacey; K Tam; N Vozhilla; S Y Kim; M P Jennings; S B Koralov; N C Elde; V J Torres
Journal:  Sci Adv       Date:  2020-03-11       Impact factor: 14.136
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