Literature DB >> 29194472

ThetaMater: Bayesian estimation of population size parameter θ from genomic data.

Richard H Adams1, Drew R Schield1, Daren C Card1, Andrew Corbin1, Todd A Castoe1.   

Abstract

Summary: We describe ThetaMater, an open source R package comprising a suite of functions for efficient and scalable Bayesian estimation of the population size parameter θ from genomic data. Availability and implementation: ThetaMater is available at GitHub (https://github.com/radamsRHA/ThetaMater). Contact: todd.castoe@uta.edu. Supplementary information: Supplementary data are available at Bioinformatics online.

Mesh：

Year:  2018        PMID： 29194472     DOI： 10.1093/bioinformatics/btx733

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  3 in total

1.  Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.

Authors:  Gabriel Renaud; Kristian Hanghøj; Thorfinn Sand Korneliussen; Eske Willerslev; Ludovic Orlando
Journal:  Genetics       Date:  2019-05-14       Impact factor: 4.562

2.  Genome-wide genetic variation coupled with demographic and ecological niche modeling of the dusky-footed woodrat (Neotoma fuscipes) reveal patterns of deep divergence and widespread Holocene expansion across northern California.

Authors:  Robert A Boria; Sarah K Brown; Marjorie D Matocq; Jessica L Blois
Journal:  Heredity (Edinb)       Date:  2020-12-15       Impact factor: 3.821

3.  Genomic Basis of Convergent Island Phenotypes in Boa Constrictors.

Authors:  Daren C Card; Richard H Adams; Drew R Schield; Blair W Perry; Andrew B Corbin; Giulia I M Pasquesi; Kristopher Row; Melissa J Van Kleeck; Juan M Daza; Warren Booth; Chad E Montgomery; Scott M Boback; Todd A Castoe
Journal:  Genome Biol Evol       Date:  2019-11-01       Impact factor: 3.416
  3 in total

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