Literature DB >> 29189942

The Conspicuity of CRISPR-Cpf1 System as a Significant Breakthrough in Genome Editing.

Hadi Bayat1,2, Mohammad Hossein Modarressi3, Azam Rahimpour4,5.   

Abstract

Clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein (Cas) is a microbial adaptive immune system. CRISPR-Cas systems are classified into two main classes and six types. Cpf1 is a putative type V (class II) CRISPR effector, which has revolutionized the genome editing approaches through multiple distinct features such as using T-rich protospacer-adjacent motif, applying a short guide RNA lacking trans-activating crRNA, introducing a staggered double-strand break, and possessing RNA processing activity in addition to DNA nuclease activity. In the present review, we attempt to highlight most recent advances in CRISPR-Cpf1 (CRISPR-Cas12a) system in particular, considering ground expeditions of the nature and the biology of this system, introducing novel Cpf1 variants that have broadened the versatility and feasibility of CRISPR-Cpf1 system, and lastly the great impact of the CRISPR-Cpf1 system on the manipulation of the genome of prokaryotic, mammalian, and plant models is summarized. With regard to recent developments in utilizing the CRISPR-Cpf1 system in genome editing of various organisms, it can be concluded with confidence that this system is a reliable molecular toolbox of genome editing approaches.

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Year:  2017        PMID: 29189942     DOI: 10.1007/s00284-017-1406-8

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  78 in total

1.  Targeted mutagenesis in mice by electroporation of Cpf1 ribonucleoproteins.

Authors:  Junho K Hur; Kyoungmi Kim; Kyung Wook Been; Gayoung Baek; Sunghyeok Ye; Junseok W Hur; Seuk-Min Ryu; Youn Su Lee; Jin-Soo Kim
Journal:  Nat Biotechnol       Date:  2016-06-06       Impact factor: 54.908

2.  Generation of knockout mice by Cpf1-mediated gene targeting.

Authors:  Yongsub Kim; Seung-A Cheong; Jong Geol Lee; Sang-Wook Lee; Myeong Sup Lee; In-Jeoung Baek; Young Hoon Sung
Journal:  Nat Biotechnol       Date:  2016-06-06       Impact factor: 54.908

Review 3.  Cornerstones of CRISPR-Cas in drug discovery and therapy.

Authors:  Christof Fellmann; Benjamin G Gowen; Pei-Chun Lin; Jennifer A Doudna; Jacob E Corn
Journal:  Nat Rev Drug Discov       Date:  2016-12-23       Impact factor: 84.694

4.  Cas5d protein processes pre-crRNA and assembles into a cascade-like interference complex in subtype I-C/Dvulg CRISPR-Cas system.

Authors:  Ki Hyun Nam; Charles Haitjema; Xueqi Liu; Fran Ding; Hongwei Wang; Matthew P DeLisa; Ailong Ke
Journal:  Structure       Date:  2012-07-26       Impact factor: 5.006

5.  Sequence- and structure-specific RNA processing by a CRISPR endonuclease.

Authors:  Rachel E Haurwitz; Martin Jinek; Blake Wiedenheft; Kaihong Zhou; Jennifer A Doudna
Journal:  Science       Date:  2010-09-10       Impact factor: 47.728

6.  GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases.

Authors:  Shengdar Q Tsai; Zongli Zheng; Nhu T Nguyen; Matthew Liebers; Ved V Topkar; Vishal Thapar; Nicolas Wyvekens; Cyd Khayter; A John Iafrate; Long P Le; Martin J Aryee; J Keith Joung
Journal:  Nat Biotechnol       Date:  2014-12-16       Impact factor: 54.908

7.  Genome-wide target specificities of CRISPR-Cas9 nucleases revealed by multiplex Digenome-seq.

Authors:  Daesik Kim; Sojung Kim; Sunghyun Kim; Jeongbin Park; Jin-Soo Kim
Journal:  Genome Res       Date:  2016-01-19       Impact factor: 9.043

8.  Cpf1 proteins excise CRISPR RNAs from mRNA transcripts in mammalian cells.

Authors:  Guocai Zhong; Haimin Wang; Yujun Li; Mai H Tran; Michael Farzan
Journal:  Nat Chem Biol       Date:  2017-06-19       Impact factor: 15.040

9.  The CCTL (Cpf1-assisted Cutting and Taq DNA ligase-assisted Ligation) method for efficient editing of large DNA constructs in vitro.

Authors:  Chao Lei; Shi-Yuan Li; Jia-Kun Liu; Xuan Zheng; Guo-Ping Zhao; Jin Wang
Journal:  Nucleic Acids Res       Date:  2017-05-19       Impact factor: 16.971

10.  CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering.

Authors:  Kornel Labun; Tessa G Montague; James A Gagnon; Summer B Thyme; Eivind Valen
Journal:  Nucleic Acids Res       Date:  2016-05-16       Impact factor: 16.971

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  11 in total

Review 1.  CRISPR Genome Editing Systems in the Genus Clostridium: a Timely Advancement.

Authors:  Kathleen N McAllister; Joseph A Sorg
Journal:  J Bacteriol       Date:  2019-07-24       Impact factor: 3.490

Review 2.  Sporulation in solventogenic and acetogenic clostridia.

Authors:  Mamou Diallo; Servé W M Kengen; Ana M López-Contreras
Journal:  Appl Microbiol Biotechnol       Date:  2021-04-26       Impact factor: 4.813

3.  CRISPRMatch: An Automatic Calculation and Visualization Tool for High-throughput CRISPR Genome-editing Data Analysis.

Authors:  Qi You; Zhaohui Zhong; Qiurong Ren; Fakhrul Hassan; Yong Zhang; Tao Zhang
Journal:  Int J Biol Sci       Date:  2018-05-22       Impact factor: 6.580

4.  The Impact of HIV-1 Genetic Diversity on CRISPR-Cas9 Antiviral Activity and Viral Escape.

Authors:  Gilles Darcis; Caroline S Binda; Bep Klaver; Elena Herrera-Carrillo; Ben Berkhout; Atze T Das
Journal:  Viruses       Date:  2019-03-13       Impact factor: 5.048

Review 5.  Elimination of infectious HIV DNA by CRISPR-Cas9.

Authors:  Atze T Das; Caroline S Binda; Ben Berkhout
Journal:  Curr Opin Virol       Date:  2019-08-23       Impact factor: 7.090

Review 6.  Gene surgery: Potential applications for human diseases.

Authors:  Ayman El-Kenawy; Bachir Benarba; Adriana Freitas Neves; Thaise Gonçalves de Araujo; Bee Ling Tan; Adel Gouri
Journal:  EXCLI J       Date:  2019-10-11       Impact factor: 4.068

Review 7.  Editing SOX Genes by CRISPR-Cas: Current Insights and Future Perspectives.

Authors:  Ali Dehshahri; Alessio Biagioni; Hadi Bayat; E Hui Clarissa Lee; Mohammad Hashemabadi; Hojjat Samareh Fekri; Ali Zarrabi; Reza Mohammadinejad; Alan Prem Kumar
Journal:  Int J Mol Sci       Date:  2021-10-20       Impact factor: 5.923

8.  A Leak-Free Inducible CRISPRi/a System for Gene Functional Studies in Plasmodium falciparum.

Authors:  Xiaoying Liang; Rachasak Boonhok; Faiza Amber Siddiqui; Bo Xiao; Xiaolian Li; Junling Qin; Hui Min; Lubin Jiang; Liwang Cui; Jun Miao
Journal:  Microbiol Spectr       Date:  2022-05-05

Review 9.  A Revolution toward Gene-Editing Technology and Its Application to Crop Improvement.

Authors:  Sunny Ahmar; Sumbul Saeed; Muhammad Hafeez Ullah Khan; Shahid Ullah Khan; Freddy Mora-Poblete; Muhammad Kamran; Aroosha Faheem; Ambreen Maqsood; Muhammad Rauf; Saba Saleem; Woo-Jong Hong; Ki-Hong Jung
Journal:  Int J Mol Sci       Date:  2020-08-07       Impact factor: 5.923

10.  Establishment and application of a CRISPR-Cas12a assisted genome-editing system in Zymomonas mobilis.

Authors:  Wei Shen; Jun Zhang; Binan Geng; Mengyue Qiu; Mimi Hu; Qing Yang; Weiwei Bao; Yubei Xiao; Yanli Zheng; Wenfang Peng; Guimin Zhang; Lixin Ma; Shihui Yang
Journal:  Microb Cell Fact       Date:  2019-10-03       Impact factor: 5.328

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