Literature DB >> 29186285

Myriads: P-value-based multiple testing correction.

Antonio Carvajal-Rodríguez1.   

Abstract

Motivation: There are many multiple testing correction methods. Some of them are robust to various dependencies in the data while others are not. Some of the implementations have problems for managing high dimensional list of P-values as currently demanded by microarray and other omic technologies.
Results: The program Myriads, formerly SGoF+, provides some of the most important P-value-based correction methods jointly with a test of dependency and a P-value simulator. Myriads easily manage hundreds of thousands of P-values. Availability and implementation: http://myriads.webs.uvigo.es. Contact: myriads@uvigo.es. Supplementary information: Supplementary data are available at Bioinformatics online.

Mesh:

Year:  2018        PMID: 29186285     DOI: 10.1093/bioinformatics/btx746

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  6 in total

1.  High genetic differentiation of Indo-Pacific humpback dolphins (Sousa chinensis) along the Asian Coast of the Pacific Ocean.

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Journal:  Ecol Evol       Date:  2022-05-07       Impact factor: 3.167

Review 2.  Beyond standard pipeline and p < 0.05 in pathway enrichment analyses.

Authors:  Wentian Li; Andrew Shih; Yun Freudenberg-Hua; Wen Fury; Yaning Yang
Journal:  Comput Biol Chem       Date:  2021-02-12       Impact factor: 3.737

3.  Identification of genomic regions regulating sex determination in Atlantic salmon using high density SNP data.

Authors:  María Gabián; Paloma Morán; Ana I Fernández; Beatriz Villanueva; Amel Chtioui; Matthew P Kent; Lara Covelo-Soto; Almudena Fernández; María Saura
Journal:  BMC Genomics       Date:  2019-10-22       Impact factor: 3.969

4.  A pipeline for effectively developing highly polymorphic simple sequence repeats markers based on multi-sample genomic data.

Authors:  Hui Wang; Shenghan Gao; Yu Liu; Pengcheng Wang; Zhengwang Zhang
Journal:  Ecol Evol       Date:  2022-03-06       Impact factor: 2.912

5.  Application of multiple testing procedures for identifying relevant comorbidities, from a large set, in traumatic brain injury for research applications utilizing big health-administrative data.

Authors:  Sayantee Jana; Mitchell Sutton; Tatyana Mollayeva; Vincy Chan; Angela Colantonio; Michael David Escobar
Journal:  Front Big Data       Date:  2022-09-28

6.  Evidence of Pathogen-Induced Immunogenetic Selection across the Large Geographic Range of a Wild Seabird.

Authors:  Hila Levy; Steven R Fiddaman; Juliana A Vianna; Daly Noll; Gemma V Clucas; Jasmine K H Sidhu; Michael J Polito; Charles A Bost; Richard A Phillips; Sarah Crofts; Gary D Miller; Pierre Pistorius; Francesco Bonnadonna; Céline Le Bohec; Andrés Barbosa; Phil Trathan; Andrea Raya Rey; Laurent A F Frantz; Tom Hart; Adrian L Smith
Journal:  Mol Biol Evol       Date:  2020-06-01       Impact factor: 16.240

  6 in total

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