Literature DB >> 29181592

Selection and Qualification of Simplified QSP Models When Using Model Order Reduction Techniques.

Chihiro Hasegawa1,2, Stephen B Duffull3.   

Abstract

Quantitative systems pharmacology (QSP) models are increasingly used in drug development to provide a deep understanding of the mechanism of action of drugs and to identify appropriate disease targets. Such models are, however, not suitable for estimation purposes due to their high dimensionality. Based on any desired and specific input-output relationship, the system may be reduced to a model with fewer states and parameters. However, any simplification process will be a trade-off between model performance and complexity. In this study, we develop a weighted composite criterion which brings together the opposing indices of performance and dimensionality. The weighting factor can be determined by qualification of the simplified model based on a visual predictive check (VPC) using the precision of each parameter. The weighted criterion and model qualification techniques were illustrated with three examples: a simple compartmental pharmacokinetic model, a physiologically based pharmacokinetic (PBPK) example, and a semimechanistic model for bone mineral density. When considering the PBPK example, this automated search identified the same reduced model which had been detected in a previous report, as well as a simpler model which had not been previously identified. The simpler bone mineral density model provided an adequate description of the response even after 1 year from the initiation of treatment. The proposed criterion together with a VPC provides a natural way for model order reduction that can be fully automated and applied to multiscale models.

Keywords:  composite criterion; proper lumping; scale reduction; systems models; visual predictive check

Mesh:

Year:  2017        PMID: 29181592     DOI: 10.1208/s12248-017-0170-9

Source DB:  PubMed          Journal:  AAPS J        ISSN: 1550-7416            Impact factor:   4.009


  26 in total

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4.  Exploring inductive linearization for pharmacokinetic-pharmacodynamic systems of nonlinear ordinary differential equations.

Authors:  Chihiro Hasegawa; Stephen B Duffull
Journal:  J Pharmacokinet Pharmacodyn       Date:  2017-05-26       Impact factor: 2.745

5.  Using early biomarker data to predict long-term bone mineral density: application of semi-mechanistic bone cycle model on denosumab data.

Authors:  Jenny Zheng; Erno van Schaick; Liviawati Sutjandra Wu; Philippe Jacqmin; Juan Jose Perez Ruixo
Journal:  J Pharmacokinet Pharmacodyn       Date:  2015-06-30       Impact factor: 2.745

6.  Cancellous bone remodeling in type I (postmenopausal) osteoporosis: quantitative assessment of rates of formation, resorption, and bone loss at tissue and cellular levels.

Authors:  E F Eriksen; S F Hodgson; R Eastell; S L Cedel; W M O'Fallon; B L Riggs
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7.  Systems pharmacology of the nerve growth factor pathway: use of a systems biology model for the identification of key drug targets using sensitivity analysis and the integration of physiology and pharmacology.

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8.  Methodologies for Quantitative Systems Pharmacology (QSP) Models: Design and Estimation.

Authors:  B Ribba; H P Grimm; B Agoram; M R Davies; K Gadkar; S Niederer; N van Riel; J Timmis; P H van der Graaf
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2017-07-11

9.  Reduction of a Whole-Body Physiologically Based Pharmacokinetic Model to Stabilise the Bayesian Analysis of Clinical Data.

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Journal:  AAPS J       Date:  2015-11-04       Impact factor: 4.009

Review 10.  Recent Advances in Development and Application of Physiologically-Based Pharmacokinetic (PBPK) Models: a Transition from Academic Curiosity to Regulatory Acceptance.

Authors:  Masoud Jamei
Journal:  Curr Pharmacol Rep       Date:  2016-04-14
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Authors:  Karim Azer; Jeffrey S Barrett
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2022-05-24

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4.  Exploring Inductive Linearization for simulation and estimation with an application to the Michaelis-Menten model.

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5.  Automated Scale Reduction of Nonlinear QSP Models With an Illustrative Application to a Bone Biology System.

Authors:  Chihiro Hasegawa; Stephen B Duffull
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2018-08-13

Review 6.  Two heads are better than one: current landscape of integrating QSP and machine learning : An ISoP QSP SIG white paper by the working group on the integration of quantitative systems pharmacology and machine learning.

Authors:  Tongli Zhang; Ioannis P Androulakis; Peter Bonate; Limei Cheng; Tomáš Helikar; Jaimit Parikh; Christopher Rackauckas; Kalyanasundaram Subramanian; Carolyn R Cho
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  6 in total

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