| Literature DB >> 29178649 |
Thomas Eggermann1, Barbara Oehl-Jaschkowitz2, Severin Dicks1, Wolfgang Thomas3, Deniz Kanber4, Beate Albrecht4, Matthias Begemann1, Ingo Kurth1, Jasmin Beygo4, Karin Buiting4.
Abstract
BACKGROUND: Maternal uniparental disomy of chromosome 6 (upd(6)mat) is a rare finding and its clinical relevance is currently unclear. Based on clinical data from two new cases and patients from the literature, the pathogenetic significance of upd(6)mat is delineated.Entities:
Keywords: Chromosome 6; imprinting disorder; trisomic rescue; uniparental disomy
Mesh:
Substances:
Year: 2017 PMID: 29178649 PMCID: PMC5702562 DOI: 10.1002/mgg3.324
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Overview on the upd(6)mat patients reported in the literature
| Ref. | Reported Hetero‐/Isodisomy | Sex | Conventional karyotype | Method for UPD detection | Monogenic mutation | Placenta | Birth at | Cesarean section; reason (if known) | IUGR | PNGR | Age at last examination | Hernia | Failure to thrive | Further findings/comments |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| van den Berg‐Loonen et al. ( | Isodisomy | M | NR | STRs | – | NR | 40 gw | NR | Yes | 41 y | NR | No | Sarcoidosis, hypercalcemia | |
| Spiro et al. ( | Isodisomy | F | NR | STRs |
| Normal | 37.5 gw | No | Yes | Catch‐up | 2.65 y | NR | NR | Congenital adrenal hypoplasia pubarche, clitoral enlargement |
| Cockwell et al. ( | Heterodisomy | M | FISH: AF: 19% T. 16, CB: normal | STRs | – | Normal | (23 gw) | IUFD | No | NR | Yes | NR | Atrioventricular septal defect | |
| Parker et al. ( | Hetero/Isodisomy | M | 48,XXY,+mar[39]/ 47,XXY[20] | STRs |
| NR | 36 gw | Yes | Yes | Slight | 8 m | NR | NR | Progressive respiratory distress due to persistent pulmonary hypertension,mild developmental delay |
| Hong et al. ( | NR | NR | Prenatally detected trisomy 6 | NR | – | NR | NR | NR | Yes | NR | NR | NR | NR | Ambiguous genitalia, persistent Mullerian structures |
| Gümüş et al. ( | Hetero/Isodisomy | M | NR | SNP array |
| NR | At term | Yes; no medical reason | No | NR | 10 m | NR | Yes | Dandy‐Walker, seizures, microcephaly, developmental delay |
| Salahshourifar et al. ( | Heterodisomy | M | 46,XY | STRs | – | NR | At term | No | No | No | 2 y | NR | NR | Cleft lip (of other origin) |
| Sasaki et al. ( | Hetero/Isodisomy | M | NR | SNP array |
| NR | 36 gw | Yes | Yes | Yes | 2.9/12 y | NR | Yes | 3M syndrome |
| Poke et al. ( | Hetero/Isodisomy | F | 46,XX | SNP array | – | Small | 35 gw | Yes; IUGR | Yes | Catch‐up | 35 m | NR | Yes | Global development delay, severe gastro‐esophageal reflux disease |
| Begemann et al. ( | Heterodisomy | F | 46,XX | SNP array | – | NR | 34 gw | Yes; oligohydramnio, IUGR, poor cardiotocogram | Yes | Yes | 7.5 m | Yes | Yes | Silver‐Russell syndrome, but caused by familial 11p15 duplication? |
| Roosing et al. ( | Isodisomy | NR | NR | SNP array |
| NR | NR | NR | Yes | No | 52 y | NR | NR | Cone dysfunction |
| Takimoto et al. ( | Isodisomy | F | NR | SNP array | – | NR | 29 gw | NR | Yes | NR | 6 m | NR | NR | WASP (X chr.): upd6 might be involved in the pathogenesis of XCI in females |
| Lazier et al. ( | Hetero/Isodisomy | M | 46,XY | SNP array | – | NR | 28 gw | Yes; IUGR | Yes | Yes | 4 m | Yes | Yes | Abnormal genitalia, respiratory distress syndrome, persistent Mullerian structures |
| Leung et al. ( | Hetero/Isodisomy | F | Placenta: 47,XX,+6[12]/46,XX[19] AF: 46,XX | NR | – | NR | 34 gw | Yes; oligohydramnio, IUGR | Yes | Too young | NR | NR | Increased amount of chromosome 6 material in maternal plasma fetal DNA | |
| Leung et al. ( | Heterodisomy | F | Placenta: 47,XX,+6[14]/46,XX[16] CB: 46,XX | NR | – | NR | 32 gw | Yes; reduced fetal movement, suboptimal cardiotocogram | Yes | Too young | NR | NR | ||
| Case 1 | Hetero/Isodisomy | F | 46,XX (FISH: 98/100 normal, 2x monosomy 6) | SNP array | – | Normal | 27 + 6 | Yes; poor cardiotocogram | Yes | Yes | 2.5 y | No | Yes | Facial dysmorphisms, clinodactyly of 5th digits, restlessness |
| Case 2 | Hetero/Isodisomy | M | 46,XY | SNP array |
| NR | 30 gw | Yes; oligohydramio, IUGR | Yes | Yes | 3.8/12 y | No | NR | AGS, facial dysmorphisms, clinodactyly of 5th digits, flat valgus feet |
NR, not reported; IUFD, intrauterine fetal death; STRs, short tandem repeats; SNP, single‐nucleotide polymorphism; gw, gestational week; y, year; m, month; AF, amniotic fluid; CB, chord blood; AGS, adrenogenital syndrome.
Figure 1SNP array analyses (CytoScan, Affymetrix) of three upd(6)mat patients reveal regions of homozygosity which correspond to UPiD (CytoScan results are analyzed with the ChasSoftware, Affymetrix, Wycombe/UK). (A) Distribution of stretches with loss of heterozygosity (bars) corresponding to isodisomic uniparent disomy regions. (B) Distribution of SNP and CNV probes on the array. (C) Ideogram of chromosome 6 and rough localization of the gene.
Figure 2Results of the methylation analyses by deep bisulfite sequencing. (A) Comparative results for both amplicons covering the ‐DMR. Each sample is represented in a single line. The average methylation over all analysed CpGs is given below the sample name on the left hand side together with the number of analysed reads. Every square represents an analysed CpG. The number inside gives the average methylation of the CpG over all analysed reads of the sample. Red is methylated, blue is unmethylated. (NC ‐ normal control blood sample; Case 2 – Case 2 blood sample; Placenta 1‐3 – first‐term placenta samples; Placenta 4‐6 – third‐term placenta samples). (B) Methylation result for the informative first‐term placenta 2 sample. The figure shows the result of the methylation analysis for the sample after allele separation using the informative SNP rs55890439. Methylation for allele A are displayed in the plot on the left and for allele G on the right. Each line represents a single read, each column a CpG. The number of analysed reads, the average methylation over all analysed reads, and CpGs as well as the allele is given above the plot. Red is methylated, blue is unmethylated.