Literature DB >> 29176059

Multi-GPU configuration of 4D intensity modulated radiation therapy inverse planning using global optimization.

Aaron Hagan1, Amit Sawant, Michael Folkerts, Arezoo Modiri.   

Abstract

We report on the design, implementation and characterization of a multi-graphic processing unit (GPU) computational platform for higher-order optimization in radiotherapy treatment planning. In collaboration with a commercial vendor (Varian Medical Systems, Palo Alto, CA), a research prototype GPU-enabled Eclipse (V13.6) workstation was configured. The hardware consisted of dual 8-core Xeon processors, 256 GB RAM and four NVIDIA Tesla K80 general purpose GPUs. We demonstrate the utility of this platform for large radiotherapy optimization problems through the development and characterization of a parallelized particle swarm optimization (PSO) four dimensional (4D) intensity modulated radiation therapy (IMRT) technique. The PSO engine was coupled to the Eclipse treatment planning system via a vendor-provided scripting interface. Specific challenges addressed in this implementation were (i) data management and (ii) non-uniform memory access (NUMA). For the former, we alternated between parameters over which the computation process was parallelized. For the latter, we reduced the amount of data required to be transferred over the NUMA bridge. The datasets examined in this study were approximately 300 GB in size, including 4D computed tomography images, anatomical structure contours and dose deposition matrices. For evaluation, we created a 4D-IMRT treatment plan for one lung cancer patient and analyzed computation speed while varying several parameters (number of respiratory phases, GPUs, PSO particles, and data matrix sizes). The optimized 4D-IMRT plan enhanced sparing of organs at risk by an average reduction of [Formula: see text] in maximum dose, compared to the clinical optimized IMRT plan, where the internal target volume was used. We validated our computation time analyses in two additional cases. The computation speed in our implementation did not monotonically increase with the number of GPUs. The optimal number of GPUs (five, in our study) is directly related to the hardware specifications. The optimization process took 35 min using 50 PSO particles, 25 iterations and 5 GPUs.

Entities:  

Mesh:

Year:  2018        PMID: 29176059      PMCID: PMC5796762          DOI: 10.1088/1361-6560/aa9c96

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  20 in total

1.  A GPU OpenCL based cross-platform Monte Carlo dose calculation engine (goMC).

Authors:  Zhen Tian; Feng Shi; Michael Folkerts; Nan Qin; Steve B Jiang; Xun Jia
Journal:  Phys Med Biol       Date:  2015-09-09       Impact factor: 3.609

2.  Towards real-time radiation therapy: GPU accelerated superposition/convolution.

Authors:  Robert Jacques; Russell Taylor; John Wong; Todd McNutt
Journal:  Comput Methods Programs Biomed       Date:  2009-08-19       Impact factor: 5.428

3.  GPU-based ultrafast IMRT plan optimization.

Authors:  Chunhua Men; Xuejun Gu; Dongju Choi; Amitava Majumdar; Ziyi Zheng; Klaus Mueller; Steve B Jiang
Journal:  Phys Med Biol       Date:  2009-10-14       Impact factor: 3.609

Review 4.  GPU computing in medical physics: a review.

Authors:  Guillem Pratx; Lei Xing
Journal:  Med Phys       Date:  2011-05       Impact factor: 4.071

5.  Inverse 4D conformal planning for lung SBRT using particle swarm optimization.

Authors:  A Modiri; X Gu; A Hagan; R Bland; P Iyengar; R Timmerman; A Sawant
Journal:  Phys Med Biol       Date:  2016-08-01       Impact factor: 3.609

Review 6.  GPU-based high-performance computing for radiation therapy.

Authors:  Xun Jia; Peter Ziegenhein; Steve B Jiang
Journal:  Phys Med Biol       Date:  2014-02-03       Impact factor: 3.609

7.  Motion management with phase-adapted 4D-optimization.

Authors:  Omid Nohadani; Joao Seco; Thomas Bortfeld
Journal:  Phys Med Biol       Date:  2010-08-16       Impact factor: 3.609

8.  Radiotherapy Planning Using an Improved Search Strategy in Particle Swarm Optimization.

Authors:  Arezoo Modiri; Xuejun Gu; Aaron M Hagan; Amit Sawant
Journal:  IEEE Trans Biomed Eng       Date:  2016-06-27       Impact factor: 4.538

9.  Improvement of CT-based treatment-planning models of abdominal targets using static exhale imaging.

Authors:  J M Balter; K L Lam; C J McGinn; T S Lawrence; R K Ten Haken
Journal:  Int J Radiat Oncol Biol Phys       Date:  1998-07-01       Impact factor: 7.038

10.  IMRT treatment planning on 4D geometries for the era of dynamic MLC tracking.

Authors:  Yelin Suh; Walter Murray; Paul J Keall
Journal:  Technol Cancer Res Treat       Date:  2013-12-17
View more
  3 in total

1.  Inverse-planned deliverable 4D-IMRT for lung SBRT.

Authors:  Mahdi Hamzeei; Arezoo Modiri; Narges Kazemzadeh; Aaron Hagan; Amit Sawant
Journal:  Med Phys       Date:  2018-10-01       Impact factor: 4.071

2.  Virtual Bronchoscopy-Guided Treatment Planning to Map and Mitigate Radiation-Induced Airway Injury in Lung SAbR.

Authors:  Narges Kazemzadeh; Arezoo Modiri; Santanu Samanta; Yulong Yan; Ross Bland; Timothy Rozario; Henky Wibowo; Puneeth Iyengar; Chul Ahn; Robert Timmerman; Amit Sawant
Journal:  Int J Radiat Oncol Biol Phys       Date:  2018-05-02       Impact factor: 7.038

3.  Combining Serial and Parallel Functionality in Functional Lung Avoidance Radiation Therapy.

Authors:  Esther M Vicente; Arezoo Modiri; John Kipritidis; Kun-Chang Yu; Kai Sun; Jochen Cammin; Arun Gopal; Jingzhu Xu; Sina Mossahebi; Aaron Hagan; Yulong Yan; Daniel Rockwell Owen; Pranshu Mohindra; Martha M Matuszak; Robert D Timmerman; Amit Sawant
Journal:  Int J Radiat Oncol Biol Phys       Date:  2022-03-09       Impact factor: 8.013

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.