Literature DB >> 29175817

Producing membrane proteins one simulation at a time.

James C Gumbart1.   

Abstract

Integral membrane proteins are studied with a number of structural and biophysical techniques, many requiring protein overexpression to reach sufficient quantities. However, achievement of the overexpression of membrane proteins is not necessarily straightforward, and the mechanisms and factors that influence expression are not clearly understood. A new study has now broken through this uncertainty by demonstrating the capability of coarse-grained simulations of membrane protein insertion to predict protein expression levels in Escherichia coli.
© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

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Year:  2017        PMID: 29175817      PMCID: PMC5702689          DOI: 10.1074/jbc.H117.813469

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  10 in total

1.  X-ray structure of a protein-conducting channel.

Authors:  Bert Van den Berg; William M Clemons; Ian Collinson; Yorgo Modis; Enno Hartmann; Stephen C Harrison; Tom A Rapoport
Journal:  Nature       Date:  2003-12-03       Impact factor: 49.962

2.  Control of membrane protein topology by a single C-terminal residue.

Authors:  Susanna Seppälä; Joanna S Slusky; Pilar Lloris-Garcerá; Mikaela Rapp; Gunnar von Heijne
Journal:  Science       Date:  2010-05-27       Impact factor: 47.728

3.  Recognition of transmembrane helices by the endoplasmic reticulum translocon.

Authors:  Tara Hessa; Hyun Kim; Karl Bihlmaier; Carolina Lundin; Jorrit Boekel; Helena Andersson; Ingmarie Nilsson; Stephen H White; Gunnar von Heijne
Journal:  Nature       Date:  2005-01-27       Impact factor: 49.962

Review 4.  Decrypting protein insertion through the translocon with free-energy calculations.

Authors:  James C Gumbart; Christophe Chipot
Journal:  Biochim Biophys Acta       Date:  2016-02-16

Review 5.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

6.  Improving membrane protein expression by optimizing integration efficiency.

Authors:  Michiel J M Niesen; Stephen S Marshall; Thomas F Miller; William M Clemons
Journal:  J Biol Chem       Date:  2017-09-16       Impact factor: 5.157

7.  De novo design of a transmembrane Zn²⁺-transporting four-helix bundle.

Authors:  Nathan H Joh; Tuo Wang; Manasi P Bhate; Rudresh Acharya; Yibing Wu; Michael Grabe; Mei Hong; Gevorg Grigoryan; William F DeGrado
Journal:  Science       Date:  2014-12-19       Impact factor: 47.728

8.  A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency.

Authors:  Stephen S Marshall; Michiel J M Niesen; Axel Müller; Katrin Tiemann; Shyam M Saladi; Rachel P Galimidi; Bin Zhang; William M Clemons; Thomas F Miller
Journal:  Cell Rep       Date:  2016-08-11       Impact factor: 9.423

9.  Long-timescale dynamics and regulation of Sec-facilitated protein translocation.

Authors:  Bin Zhang; Thomas F Miller
Journal:  Cell Rep       Date:  2012-10-19       Impact factor: 9.423

10.  Regulation of multispanning membrane protein topology via post-translational annealing.

Authors:  Reid C Van Lehn; Bin Zhang; Thomas F Miller
Journal:  Elife       Date:  2015-09-26       Impact factor: 8.140

  10 in total

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