X Y Ma 1 , W Z He 1 , T L Yuan 1 , J J Xiao 1 , X M Wang 1 , S Y Li 1 , H B Liu 1 , Q Li 1 Show Affiliations »
Abstract
OBJECTIVES: To investigate the single nucleotide polymorphism （SNP） and haplotypes in differentially methylated region （DMR） upstream of H19 gene in Guangdong Han population. METHODS: The PIA typing and restriction enzyme McrBC and HpaⅡ were used to digest the genomic DNA and obtain the individual uniparental DNA template strand. The data of uniparental SNP alleles, genotypes and haplotypes in DMR upstream of H19 gene were obtained by sequencing. RESULTS: A total of 13 SNPs （rs10840167, rs2525883, rs12417375, rs4930101, rs2525882, rs2735970, rs2735971, rs11042170, rs2735972, rs10732516, rs2071094, rs2107425, and rs4930098） and one mutation locus （g7351c） were found. All loci followed the Hardy-Weinberg equilibrium （P>0.05） by statistical analysis. Except for rs12417375 （DP=0.279） locus, the DP of remaining 12 SNPs were 0.446-0.614, and the g7351c mutation locus （DP=0.013） was the particular loci of the Southern Chinese Han population. Eight haplotypes （designated as haplotype 1-8） were detected, in which 3 haplotypes had not yet been reported and the DP, PIC, PE and H were 0.891, 0.714, 0.524 and 0.758, respectively. CONCLUSIONS: Obtained by PIA typing, the SNP in DMR upstream of H19 gene and its haplotypes genetic marker system have a high determination power and show a good practical value in forensic identification. Copyright© by the Editorial Department of Journal of Forensic Medicine
OBJECTIVES: To investigate the single nucleotide polymorphism （SNP） and haplotypes in differentially methylated region （DMR） upstream of H19 gene in Guangdong Han population. METHODS: The PIA typing and restriction enzyme McrBC and HpaⅡ were used to digest the genomic DNA and obtain the individual uniparental DNA template strand. The data of uniparental SNP alleles, genotypes and haplotypes in DMR upstream of H19 gene were obtained by sequencing. RESULTS: A total of 13 SNPs （rs10840167 , rs2525883 , rs12417375 , rs4930101 , rs2525882 , rs2735970 , rs2735971 , rs11042170 , rs2735972 , rs10732516 , rs2071094 , rs2107425 , and rs4930098 ） and one mutation locus （g7351c） were found. All loci followed the Hardy-Weinberg equilibrium （P>0.05） by statistical analysis. Except for rs12417375 （DP=0.279） locus, the DP of remaining 12 SNPs were 0.446-0.614, and the g7351c mutation locus （DP=0.013） was the particular loci of the Southern Chinese Han population. Eight haplotypes （designated as haplotype 1-8） were detected, in which 3 haplotypes had not yet been reported and the DP, PIC, PE and H were 0.891, 0.714, 0.524 and 0.758, respectively. CONCLUSIONS: Obtained by PIA typing, the SNP in DMR upstream of H19 gene and its haplotypes genetic marker system have a high determination power and show a good practical value in forensic identification. Copyright© by the Editorial Department of Journal of Forensic Medicine
Entities: Gene
Mutation
Keywords:
DNA methylation; Guangdong; H19 gene; Han nationality; forensic genetics; polymorphism, single nucleotide
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Year: 2016
PMID： 29171736 DOI： 10.3969/j.issn.1004-5619.2016.03.006
Source DB: PubMed Journal: Fa Yi Xue Za Zhi ISSN： 1004-5619