Literature DB >> 29166541

PhotochemCAD 3: Diverse Modules for Photophysical Calculations with Multiple Spectral Databases.

Masahiko Taniguchi1, Hai Du1, Jonathan S Lindsey1.   

Abstract

The PhotochemCAD program, developed over 30 years, is described comprehensively with focus on features of the most recent version (PhotochemCAD 3). The program is equipped with a streamlined user interface and provisions for handling multiple spectral databases. Eight modules enable calculations to be performed on the basis of the spectra in the databases. The calculational modules provide results concerning properties of individual compounds (oscillator strength, transition dipole moment, natural radiative lifetime), interactions of multiple compounds (Förster energy transfer, Dexter energy transfer, analysis of energy transfer among an array of chromophores) and composition of mixtures (multicomponent analysis). Synthetic spectra (blackbody radiator, Gaussian and Lorentzian curves, delta functions) also can be generated. For comparison and calculation, synthetic and experimental spectra can be shifted along both coordinate axes and combined by addition, subtraction and use of multiplicative factors. The core databases (described in the companion paper) have been expanded to 339 compounds for which absorption spectra (including molar absorption coefficient, ε), fluorescence spectra (including fluorescence quantum yield, Φf ) and references to the primary literature have been included where available (552 spectra altogether). A database of 31 solar spectra also is included. Each calculational module is described along with illustrative examples.
© 2017 The American Society of Photobiology.

Year:  2018        PMID: 29166541     DOI: 10.1111/php.12862

Source DB:  PubMed          Journal:  Photochem Photobiol        ISSN: 0031-8655            Impact factor:   3.421


  10 in total

1.  Imaging luminescent tattoo inks for direct visualization of linac and cobalt irradiation.

Authors:  Ethan P M LaRochelle; Jennifer Soter; Leonardo Barrios; Marysia Guzmán; Samuel S Streeter; Jason R Gunn; Suyapa Bejarano; Brian W Pogue
Journal:  Med Phys       Date:  2020-03-05       Impact factor: 4.071

2.  The RGG/RG motif of AUF1 isoform p45 is a key modulator of the protein's RNA chaperone and RNA annealing activities.

Authors:  Alexandra Meyer; Ralph P Golbik; Lennart Sänger; Tobias Schmidt; Sven-Erik Behrens; Susann Friedrich
Journal:  RNA Biol       Date:  2019-04-15       Impact factor: 4.652

3.  Introducing the Tellurophene-Appended BODIPY: PDT Agent with Mass Cytometry Tracking Capabilities.

Authors:  Jacob W Campbell; Matthew T Tung; Roberto M Diaz-Rodriguez; Katherine N Robertson; Andrew A Beharry; Alison Thompson
Journal:  ACS Med Chem Lett       Date:  2021-11-22       Impact factor: 4.345

4.  UV-adVISor: Attention-Based Recurrent Neural Networks to Predict UV-Vis Spectra.

Authors:  Fabio Urbina; Kushal Batra; Kevin J Luebke; Jason D White; Daniel Matsiev; Lori L Olson; Jeremiah P Malerich; Maggie A Z Hupcey; Peter B Madrid; Sean Ekins
Journal:  Anal Chem       Date:  2021-11-23       Impact factor: 8.008

5.  Enhancing Single-Molecule Fluorescence Spectroscopy with Simple and Robust Hybrid Nanoapertures.

Authors:  Abhay Kotnala; Hongru Ding; Yuebing Zheng
Journal:  ACS Photonics       Date:  2021-05-18       Impact factor: 7.077

6.  Data-Driven and Multiscale Modeling of DNA-Templated Dye Aggregates.

Authors:  Austin Biaggne; Lawrence Spear; German Barcenas; Maia Ketteridge; Young C Kim; Joseph S Melinger; William B Knowlton; Bernard Yurke; Lan Li
Journal:  Molecules       Date:  2022-05-27       Impact factor: 4.927

7.  Theoretical lateral and axial sensitivity limits and choices of molecular reporters for Cherenkov-excited luminescence in tissue during x-ray beam scanning.

Authors:  Ethan P M LaRochelle; Brian W Pogue
Journal:  J Biomed Opt       Date:  2020-11       Impact factor: 3.170

8.  Unspecified verticality of Franck-Condon transitions, absorption and emission spectra of cyanine dyes, and a classically inspired approximation.

Authors:  Joseph D Alia; Joseph A Flack
Journal:  RSC Adv       Date:  2020-11-26       Impact factor: 4.036

Review 9.  Rational design of small molecule fluorescent probes for biological applications.

Authors:  Joomyung V Jun; David M Chenoweth; E James Petersson
Journal:  Org Biomol Chem       Date:  2020-08-05       Impact factor: 3.876

10.  A Skin Cancer Prophylaxis Study in Hairless Mice Using Methylene Blue, Riboflavin, and Methyl Aminolevulinate as Photosensitizing Agents in Photodynamic Therapy.

Authors:  Hans Christian Wulf; Rami Nabil Al-Chaer; Martin Glud; Peter Alshede Philipsen; Catharina Margrethe Lerche
Journal:  Pharmaceuticals (Basel)       Date:  2021-05-05
  10 in total

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