Literature DB >> 29166124

Some connections between importance sampling and enhanced sampling methods in molecular dynamics.

H C Lie1, J Quer1.   

Abstract

In molecular dynamics, enhanced sampling methods enable the collection of better statistics of rare events from a reference or target distribution. We show that a large class of these methods is based on the idea of importance sampling from mathematical statistics. We illustrate this connection by comparing the Hartmann-Schütte method for rare event simulation (J. Stat. Mech. Theor. Exp. 2012, P11004) and the Valsson-Parrinello method of variationally enhanced sampling [Phys. Rev. Lett. 113, 090601 (2014)]. We use this connection in order to discuss how recent results from the Monte Carlo methods literature can guide the development of enhanced sampling methods.

Year:  2017        PMID: 29166124     DOI: 10.1063/1.4989495

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  1 in total

1.  From offshore to onshore probabilistic tsunami hazard assessment via efficient Monte Carlo sampling.

Authors:  Gareth Davies; Rikki Weber; Kaya Wilson; Phil Cummins
Journal:  Geophys J Int       Date:  2022-04-11       Impact factor: 3.352

  1 in total

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