Literature DB >> 29165993

Hybrid Structured Illumination Expansion Microscopy Reveals Microbial Cytoskeleton Organization.

Aaron R Halpern1, Germain C M Alas1, Tyler J Chozinski1, Alexander R Paredez1, Joshua C Vaughan1.   

Abstract

Recently developed tissue-hydrogel methods for specimen expansion now enable researchers to perform super-resolution microscopy with ∼65 nm lateral resolution using ordinary microscopes, standard fluorescent probes, and inexpensive reagents. Here we use the combination of specimen expansion and the optical super-resolution microscopy technique structured illumination microscopy (SIM) to extend the spatial resolution to ∼30 nm. We apply this hybrid method, which we call ExSIM, to study the cytoskeleton of the important human pathogen Giardia lamblia including the adhesive disc and flagellar axonemes. We determined the localization of two recently identified disc-associated proteins, including DAP86676 , which localizes to disc microribbons, and the functionally unknown DAP16263 , which primarily localizes to dorsal microtubules of the disc overlap zone and the paraflagellar rod of ventral axonemes. Based on its strong performance in revealing known and unknown details of the ultrastructure of Giardia, we find that ExSIM is a simple, rapid, and powerful super-resolution method for the study of fixed specimens, and it should be broadly applicable to other biological systems of interest.

Entities:  

Keywords:  Giardia lamblia; cytoskeleton; expansion microscopy; structured illumination microscopy; super-resolution microscopy

Mesh:

Substances:

Year:  2017        PMID: 29165993      PMCID: PMC5752594          DOI: 10.1021/acsnano.7b07200

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  47 in total

1.  STED microscopy with optimized labeling density reveals 9-fold arrangement of a centriole protein.

Authors:  Lana Lau; Yin Loon Lee; Steffen J Sahl; Tim Stearns; W E Moerner
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

2.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure.

Authors:  Gleb Shtengel; James A Galbraith; Catherine G Galbraith; Jennifer Lippincott-Schwartz; Jennifer M Gillette; Suliana Manley; Rachid Sougrat; Clare M Waterman; Pakorn Kanchanawong; Michael W Davidson; Richard D Fetter; Harald F Hess
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-06       Impact factor: 11.205

3.  Super-Resolution Mapping of Neuronal Circuitry With an Index-Optimized Clearing Agent.

Authors:  Meng-Tsen Ke; Yasuhiro Nakai; Satoshi Fujimoto; Rie Takayama; Shuhei Yoshida; Tomoya S Kitajima; Makoto Sato; Takeshi Imai
Journal:  Cell Rep       Date:  2016-03-10       Impact factor: 9.423

4.  New associated structures of the anterior flagella of Giardia duodenalis.

Authors:  Claudia Maia-Brigagão; Ana Paula Rocha Gadelha; Wanderley de Souza
Journal:  Microsc Microanal       Date:  2013-09-04       Impact factor: 4.127

Review 5.  Behind the smile: cell biology and disease mechanisms of Giardia species.

Authors:  Johan Ankarklev; Jon Jerlström-Hultqvist; Emma Ringqvist; Karin Troell; Staffan G Svärd
Journal:  Nat Rev Microbiol       Date:  2010-04-19       Impact factor: 60.633

6.  Antibodies to the ventral disc protein delta-giardin prevent in vitro binding of Giardia lamblia trophozoites.

Authors:  Mark C Jenkins; Celia N O'Brien; Charles Murphy; Ryan Schwarz; Katarzyna Miska; Benjamin Rosenthal; James M Trout
Journal:  J Parasitol       Date:  2009-08       Impact factor: 1.276

7.  A detailed look at the cytoskeletal architecture of the Giardia lamblia ventral disc.

Authors:  Joanna R Brown; Cindi L Schwartz; John M Heumann; Scott C Dawson; Andreas Hoenger
Journal:  J Struct Biol       Date:  2016-01-25       Impact factor: 2.867

8.  Ultra-High Resolution 3D Imaging of Whole Cells.

Authors:  Fang Huang; George Sirinakis; Edward S Allgeyer; Lena K Schroeder; Whitney C Duim; Emil B Kromann; Thomy Phan; Felix E Rivera-Molina; Jordan R Myers; Irnov Irnov; Mark Lessard; Yongdeng Zhang; Mary Ann Handel; Christine Jacobs-Wagner; C Patrick Lusk; James E Rothman; Derek Toomre; Martin J Booth; Joerg Bewersdorf
Journal:  Cell       Date:  2016-07-07       Impact factor: 41.582

9.  Luminal localization of α-tubulin K40 acetylation by cryo-EM analysis of fab-labeled microtubules.

Authors:  Virupakshi Soppina; Jeffrey F Herbstman; Georgios Skiniotis; Kristen J Verhey
Journal:  PLoS One       Date:  2012-10-26       Impact factor: 3.240

10.  Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies.

Authors:  Paul W Tillberg; Fei Chen; Kiryl D Piatkevich; Yongxin Zhao; Chih-Chieh Jay Yu; Brian P English; Linyi Gao; Anthony Martorell; Ho-Jun Suk; Fumiaki Yoshida; Ellen M DeGennaro; Douglas H Roossien; Guanyu Gong; Uthpala Seneviratne; Steven R Tannenbaum; Robert Desimone; Dawen Cai; Edward S Boyden
Journal:  Nat Biotechnol       Date:  2016-07-04       Impact factor: 54.908

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  23 in total

1.  Molecular organization of mammalian meiotic chromosome axis revealed by expansion STORM microscopy.

Authors:  Huizhong Xu; Zhisong Tong; Qing Ye; Tengqian Sun; Zhenmin Hong; Lunfeng Zhang; Alexandra Bortnick; Sunglim Cho; Paolo Beuzer; Joshua Axelrod; Qiongzheng Hu; Melissa Wang; Sylvia M Evans; Cornelis Murre; Li-Fan Lu; Sha Sun; Kevin D Corbett; Hu Cang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-23       Impact factor: 11.205

Review 2.  The quantification and regulation of microtubule dynamics in the mitotic spindle.

Authors:  Juan Jesus Vicente; Linda Wordeman
Journal:  Curr Opin Cell Biol       Date:  2019-05-17       Impact factor: 8.382

Review 3.  Nanoscale fluorescence imaging of biological ultrastructure via molecular anchoring and physical expansion.

Authors:  Wei Wang; Yat Ho Chan; SoYoung Kwon; Jamuna Tandukar; Ruixuan Gao
Journal:  Nano Converg       Date:  2022-07-09

Review 4.  Expansion microscopy: enabling single cell analysis in intact biological systems.

Authors:  Shahar Alon; Grace H Huynh; Edward S Boyden
Journal:  FEBS J       Date:  2018-07-09       Impact factor: 5.542

5.  X10 expansion microscopy enables 25-nm resolution on conventional microscopes.

Authors:  Sven Truckenbrodt; Manuel Maidorn; Dagmar Crzan; Hanna Wildhagen; Selda Kabatas; Silvio O Rizzoli
Journal:  EMBO Rep       Date:  2018-07-09       Impact factor: 8.807

6.  Three-Dimensional and Chemical Mapping of Intracellular Signaling Nanodomains in Health and Disease with Enhanced Expansion Microscopy.

Authors:  Thomas M D Sheard; Miriam E Hurley; John Colyer; Ed White; Ruth Norman; Eleftheria Pervolaraki; Kaarjel K Narayanasamy; Yufeng Hou; Hannah M Kirton; Zhaokang Yang; Liam Hunter; Jung-Uk Shim; Alexander H Clowsley; Andrew J Smith; David Baddeley; Christian Soeller; Michael A Colman; Izzy Jayasinghe
Journal:  ACS Nano       Date:  2019-02-08       Impact factor: 15.881

7.  Adaptive wavefront correction structured illumination holographic tomography.

Authors:  Vinoth Balasubramani; Han-Yen Tu; Xin-Ji Lai; Chau-Jern Cheng
Journal:  Sci Rep       Date:  2019-07-19       Impact factor: 4.379

8.  Measuring expansion from macro- to nanoscale using NPC as intrinsic reporter.

Authors:  Luca Pesce; Marco Cozzolino; Luca Lanzanò; Alberto Diaspro; Paolo Bianchini
Journal:  J Biophotonics       Date:  2019-05-28       Impact factor: 3.207

9.  Label-retention expansion microscopy.

Authors:  Xiaoyu Shi; Qi Li; Zhipeng Dai; Arthur A Tran; Siyu Feng; Alejandro D Ramirez; Zixi Lin; Xiaomeng Wang; Tracy T Chow; Jiapei Chen; Dhivya Kumar; Andrew R McColloch; Jeremy F Reiter; Eric J Huang; Ian B Seiple; Bo Huang
Journal:  J Cell Biol       Date:  2021-07-06       Impact factor: 10.539

10.  Mechanically resolved imaging of bacteria using expansion microscopy.

Authors:  Youngbin Lim; Anthony L Shiver; Margarita Khariton; Keara M Lane; Katharine M Ng; Samuel R Bray; Jian Qin; Kerwyn Casey Huang; Bo Wang
Journal:  PLoS Biol       Date:  2019-10-17       Impact factor: 8.029

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