| Literature DB >> 29160858 |
Sarawut Suksuphew1, Paramate Horkaew2.
Abstract
Background: On diagnosing Alzheimer's disease (AD), most existing imaging-based schemes have relied on analyzing the hippocampus and its peripheral structures. Recent studies have confirmed that volumetric variations are one of the primary indicators in differentiating symptomatic AD from healthy aging. In this study, we focused on deriving discriminative shape-based parameters that could effectively identify early AD from volumetric computerized tomography (VCT) delineation, which was previously almost intangible.Entities:
Keywords: early Alzheimer’s disease; shape analysis; support vector machine; volumetric computerized tomography
Year: 2017 PMID: 29160858 PMCID: PMC5704162 DOI: 10.3390/brainsci7110155
Source DB: PubMed Journal: Brain Sci ISSN: 2076-3425
Figure 1ROI in bilateral hippocampal regions (the white box).
Figure 2Annotated sketch (left) (A = Hippocampal formation height, B = Hippocampal and stem distance, C = Choroid fissure width, D = Temporal horn width) of topological prescription and the corresponding shape overlaid on an image (right). For clarity, the fiducial markers (stars) are placed on the left contour, while the regularized control points (circles) are shown on the right one.
Characteristic Data.
| Subject | Control | ||
|---|---|---|---|
| Age (40–90 Year) | 68.51 ± 5.5 | 67.93 ± 5 | 0.076 |
| Female | 25 (75.8%) | 15 (50%) | 0.065 |
| Highest level of education | Less than Level 6 (90.9%) | Less than Level 6 (60%) | 0.034 |
| Occupation | Retired (75.8%) | Retired (50%) | 0.066 |
| Family history of dementia | None | None | - |
| Average blood pressure (mmHg) | 135.1/75.5 ± 14.2/7.3 | 139.2/81.4 ± 14.4/8 | 0.064 |
| TMSE* score (point) | 18.3 ± 1.6 | 27.5 ± 1.6 | 0.027 |
p-Values are assessed using Student t-test or Fisher exact tests. * TMSE: Mini-mental State Examination in Thai language.
Figure 3Example of large (top) and small (bottom) degree of inter-reader variabilities.
Figure 4Principal modes of variations within ±2 standard deviations.
Figure 5Scatter plots of two model parameters extracted from 382 hippocampi. Horizontal and vertical axes represents the first and second modes of variations, respectively.
Figure 6Scatter plots of two model parameters consensually extracted from 63 hippocampi.
Support Vector Machine (SVM) Numerical Assessments.
| Attributes | Left | % | Right | % |
|---|---|---|---|---|
| Correctly Classified Instances | 60 | 95.2381 | 62 | 98.4127 |
| Incorrectly Classified Instance | 3 | 4.7619 | 1 | 1.5873 |
| Kappa Statistics | 0.9047 | 0.9682 | ||
| Mean Absolute Error | 0.0476 | 0.0159 | ||
| Root Mean Squared Error | 0.2182 | 0.1260 | ||
| Relative Absolute Error | 9.5395% | 3.1798% | ||
| Root Relative Squared Error | 43.6690% | 25.2123% |
Numbers of correctly (TP–C, TP–S, TN–C and TN–S) and incorrectly (FP–C, FP–S, FN–C and FN–S) classified hippocampal samples w.r.t. number of model parameters (modes) taken into account.
| 1 | 29 | 30 | 29 | 30 | 3 | 1 | 1 | 3 |
| 2 | 28 | 31 | 28 | 31 | 2 | 2 | 2 | 2 |
| 3 | 29 | 31 | 29 | 31 | 2 | 1 | 1 | 2 |
| 4 | 29 | 30 | 29 | 30 | 3 | 1 | 1 | 3 |
| 5 | 29 | 31 | 29 | 31 | 2 | 1 | 1 | 2 |
| 6 | 29 | 32 | 29 | 32 | 1 | 1 | 1 | 1 |
| 7 | 29 | 33 | 29 | 33 | 0 | 1 | 1 | 0 |
| 8 | 29 | 33 | 29 | 33 | 0 | 1 | 1 | 0 |
| 9 | 29 | 33 | 29 | 33 | 0 | 1 | 1 | 0 |
| 10 | 29 | 33 | 29 | 33 | 0 | 1 | 1 | 0 |
| 1 | 30 | 32 | 30 | 32 | 1 | 0 | 0 | 1 |
| 2 | 29 | 32 | 29 | 32 | 1 | 1 | 1 | 1 |
| 3 | 30 | 32 | 30 | 32 | 1 | 0 | 0 | 1 |
| 4 | 30 | 32 | 30 | 32 | 1 | 0 | 0 | 1 |
| 5 | 30 | 33 | 30 | 33 | 0 | 0 | 0 | 0 |
| 6 | 30 | 33 | 30 | 33 | 0 | 0 | 0 | 0 |
| 7 | 30 | 33 | 30 | 33 | 0 | 0 | 0 | 0 |
| 8 | 30 | 33 | 30 | 33 | 0 | 0 | 0 | 0 |
| 9 | 30 | 33 | 30 | 33 | 0 | 0 | 0 | 0 |
| 10 | 30 | 32 | 30 | 32 | 1 | 0 | 0 | 1 |
It can be noticed that the number of incorrectly classified samples decreased, as more number of modes were considered. For the left side, accuracy was not improved after 7 modes, while for the right one, the classification was consistently accurate for the 5–9 modes, after which a sign of over fitting started to appear. In addition, to evaluate the model performance, various aspects of the SVM classification, i.e., sensitivity, specificity, precision, accuracy, and F-measure were computed for each side of hippocampus (Table 4).
Figure 7Histograms showing normalized area distribution (top) and corresponding approximated Gaussian curves (bottom) of left and right hippocampi for both control and subjects. Black arrows indicate overlapping area.
Sensitivity, specificity, precision, accuracy and F-measure for the controls (C) and subjects (S) groups. The results w.r.t. the number of modes (M) of both left (L) and right (R) sides are shown.
| 1 | 0.967 | 0.909 | 0.906 | 0.968 | 0.906 | 0.968 | 0.935 | 0.938 | 0.935 | 0.938 |
| 2 | 0.933 | 0.939 | 0.933 | 0.939 | 0.933 | 0.939 | 0.933 | 0.939 | 0.933 | 0.939 |
| 3 | 0.967 | 0.939 | 0.935 | 0.969 | 0.935 | 0.969 | 0.951 | 0.954 | 0.951 | 0.954 |
| 4 | 0.967 | 0.909 | 0.906 | 0.968 | 0.906 | 0.968 | 0.935 | 0.938 | 0.935 | 0.938 |
| 5 | 0.967 | 0.939 | 0.935 | 0.969 | 0.935 | 0.969 | 0.951 | 0.954 | 0.951 | 0.954 |
| 6 | 0.967 | 0.970 | 0.967 | 0.970 | 0.967 | 0.970 | 0.967 | 0.970 | 0.967 | 0.970 |
| 7 | 0.967 | 1 | 1 | 0.971 | 1 | 0.971 | 0.983 | 0.985 | 0.983 | 0.985 |
| 8 | 0.967 | 1 | 1 | 0.971 | 1 | 0.971 | 0.983 | 0.985 | 0.983 | 0.985 |
| 9 | 0.967 | 1 | 1 | 0.971 | 1 | 0.971 | 0.983 | 0.985 | 0.983 | 0.985 |
| 10 | 0.967 | 1 | 1 | 0.971 | 1 | 0.971 | 0.983 | 0.985 | 0.983 | 0.985 |
| 1 | 1 | 0.970 | 0.968 | 1 | 0.968 | 1 | 0.984 | 0.985 | 0.984 | 0.985 |
| 2 | 0.967 | 0.970 | 0.967 | 0.970 | 0.967 | 0.970 | 0.967 | 0.970 | 0.967 | 0.970 |
| 3 | 1 | 0.970 | 0.968 | 1 | 0.968 | 1 | 0.984 | 0.985 | 0.984 | 0.985 |
| 4 | 1 | 0.970 | 0.968 | 1 | 0.968 | 1 | 0.984 | 0.985 | 0.984 | 0.985 |
| 5 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| 6 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| 7 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| 8 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| 9 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| 10 | 1 | 0.970 | 0.968 | 1 | 0.968 | 1 | 0.984 | 0.985 | 0.984 | 0.985 |
From Table 4, the model sensitivity increased as the number of modes increased. For the left hippocampus, the sensitivity converged at the 3rd and 7th mode for control and subject groups, respectively. Likewise, for the right hippocampus the value converged at the 3rd and 5th modes. The model specificity, precision, accuracy and F-measure of the left hand side also increased with the number of models and converged at the 7th mode for both controls and subjects. For the right hand side, the similar trend can be observed with convergence occurred starting from the 3rd and not later than the 5th mode for both groups.
Figure 8The overall trend of clustering performance versus the model complexity. The arrows indicate the optimal number of model parameters for diagnosing early AD.