Literature DB >> 29157494

Plant metabolism as studied by NMR spectroscopy.

Catherine Deborde1, Annick Moing1, Léa Roch1, Daniel Jacob1, Dominique Rolin2, Patrick Giraudeau3.   

Abstract

The study of plant metabolism impacts a broad range of domains such as plant cultural practices, plant breeding, human or animal nutrition, phytochemistry and green biotechnologies. Plant metabolites are extremely diverse in terms of structure or compound families as well as concentrations. This review attempts to illustrate how NMR spectroscopy, with its broad variety of experimental approaches, has contributed widely to the study of plant primary or specialized metabolism in very diverse ways. The review presents recent developments of one-dimensional and multi-dimensional NMR methods to study various aspects of plant metabolism. Through recent examples, it highlights how NMR has proved to be an invaluable tool for the global characterization of sample composition within metabolomic studies, and shows some examples of use for targeted phytochemistry, with a special focus on compound identification and quantitation. In such cases, NMR approaches are often used to provide snapshots of the plant sample composition. The review also covers dynamic aspects of metabolism, with a description of NMR techniques to measure metabolic fluxes - in most cases after stable isotope labelling. It is mainly intended for NMR specialists who would be interested to learn more about the potential of their favourite technique in plant sciences and about specific details of NMR approaches in this field. Therefore, as a practical guide, a paragraph on the specific precautions that should be taken for sample preparation is also included. In addition, since the quality of NMR metabolic studies is highly dependent on approaches to data processing and data sharing, a specific part is dedicated to these aspects. The review concludes with perspectives on the emerging methods that could change significantly the role of NMR in the field of plant metabolism by boosting its sensitivity. The review is illustrated throughout with examples of studies selected to represent diverse applications of liquid-state or HR-MAS NMR.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Data processing; Fluxomics; Metabolic profiling; Metabolomics; Plant metabolism; Quantitative NMR

Mesh:

Substances:

Year:  2017        PMID: 29157494     DOI: 10.1016/j.pnmrs.2017.05.001

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN: 0079-6565            Impact factor:   9.795


  21 in total

1.  Anisotropy of transverse and longitudinal relaxations in liquids entrapped in nano- and micro-cavities of a plant stem.

Authors:  Gregory Furman; Shaul Goren; Victor Meerovich; Alexander Panich; Vladimir Sokolovsky; Yang Xia
Journal:  J Magn Reson       Date:  2021-08-18       Impact factor: 2.229

2.  1H-NMR metabolomic profiling reveals a distinct metabolic recovery response in shoots and roots of temporarily drought-stressed sugar beets.

Authors:  Rita Wedeking; Mickaël Maucourt; Catherine Deborde; Annick Moing; Yves Gibon; Heiner E Goldbach; Monika A Wimmer
Journal:  PLoS One       Date:  2018-05-08       Impact factor: 3.240

3.  Antioxidant Activity and Spectroscopic Characteristics of Extractable and Non-Extractable Phenolics from Terminalia sericea Burch. ex DC.

Authors:  Chinedu Anokwuru; Muendi Sigidi; Marlaine Boukandou; Peter Tshisikhawe; Afsatou Traore; Natasha Potgieter
Journal:  Molecules       Date:  2018-05-29       Impact factor: 4.411

Review 4.  Optimizing 1D 1H-NMR profiling of plant samples for high throughput analysis: extract preparation, standardization, automation and spectra processing.

Authors:  Catherine Deborde; Jean-Xavier Fontaine; Daniel Jacob; Adolfo Botana; Valérie Nicaise; Florence Richard-Forget; Sylvain Lecomte; Cédric Decourtil; Kamar Hamade; François Mesnard; Annick Moing; Roland Molinié
Journal:  Metabolomics       Date:  2019-02-26       Impact factor: 4.290

Review 5.  Metabolomics: A Way Forward for Crop Improvement.

Authors:  Ali Razzaq; Bushra Sadia; Ali Raza; Muhammad Khalid Hameed; Fozia Saleem
Journal:  Metabolites       Date:  2019-12-14

Review 6.  Progress towards Sustainable Control of Xylella fastidiosa subsp. pauca in Olive Groves of Salento (Apulia, Italy).

Authors:  Marco Scortichini; Stefania Loreti; Nicoletta Pucci; Valeria Scala; Giuseppe Tatulli; Dimitri Verweire; Michael Oehl; Urs Widmer; Josep Massana Codina; Peter Hertl; Gianluigi Cesari; Monica De Caroli; Federica Angilè; Danilo Migoni; Laura Del Coco; Chiara Roberta Girelli; Giuseppe Dalessandro; Francesco Paolo Fanizzi
Journal:  Pathogens       Date:  2021-05-29

7.  Different "metabolomic niches" of the highly diverse tree species of the French Guiana rainforests.

Authors:  Albert Gargallo-Garriga; Jordi Sardans; Victor Granda; Joan Llusià; Guille Peguero; Dolores Asensio; Romà Ogaya; Ifigenia Urbina; Leandro Van Langenhove; Lore T Verryckt; Jérome Chave; Elodie A Courtois; Clément Stahl; Oriol Grau; Karel Klem; Otmar Urban; Ivan A Janssens; Josep Peñuelas
Journal:  Sci Rep       Date:  2020-04-24       Impact factor: 4.379

Review 8.  Get the Balance Right: ROS Homeostasis and Redox Signalling in Fruit.

Authors:  Guillaume Decros; Pierre Baldet; Bertrand Beauvoit; Rebecca Stevens; Amélie Flandin; Sophie Colombié; Yves Gibon; Pierre Pétriacq
Journal:  Front Plant Sci       Date:  2019-09-18       Impact factor: 5.753

Review 9.  Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis.

Authors:  Mohamed A Salem; Leonardo Perez de Souza; Ahmed Serag; Alisdair R Fernie; Mohamed A Farag; Shahira M Ezzat; Saleh Alseekh
Journal:  Metabolites       Date:  2020-01-15

10.  31P-NMR Metabolomics Revealed Species-Specific Use of Phosphorous in Trees of a French Guiana Rainforest.

Authors:  Albert Gargallo-Garriga; Jordi Sardans; Joan Llusià; Guille Peguero; Dolores Asensio; Romà Ogaya; Ifigenia Urbina; Leandro Van Langenhove; Lore T Verryckt; Elodie A Courtois; Clément Stahl; Oriol Grau; Otmar Urban; Ivan A Janssens; Pau Nolis; Miriam Pérez-Trujillo; Teodor Parella; Josep Peñuelas
Journal:  Molecules       Date:  2020-08-31       Impact factor: 4.411

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