Literature DB >> 29153139

Importance of reliable variant calling and clear phenotyping when reporting on gene panel testing in renal disease.

Rozemarijn Snoek1, Albertien M van Eerde1, Nine V A M Knoers2.   

Abstract

Genetic testing in kidney disease has been gaining more attention in recent years as an important diagnostic tool. Especially in selected cases, genetic testing can be a first mode of diagnostics in various renal diseases. Mallett et al. are the first to report on the overall diagnostic yield of targeted gene panel testing in familial kidney disease, both in pediatric and adult cases. In this commentary we discuss the importance of a clear gene panel design, with an up-to-date enrichment offering sufficient coverage for each gene, and a validated pipeline for variant calling. We also emphasize the necessity of detailed phenotyping, including a pedigree, as a critical factor for gene panel selection and variant interpretation.
Copyright © 2017 International Society of Nephrology. Published by Elsevier Inc. All rights reserved.

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Year:  2017        PMID: 29153139     DOI: 10.1016/j.kint.2017.07.009

Source DB:  PubMed          Journal:  Kidney Int        ISSN: 0085-2538            Impact factor:   10.612


  4 in total

Review 1.  Clinical Integration of Genome Diagnostics for Congenital Anomalies of the Kidney and Urinary Tract.

Authors:  Rik Westland; Kirsten Y Renkema; Nine V A M Knoers
Journal:  Clin J Am Soc Nephrol       Date:  2020-04-20       Impact factor: 8.237

2.  Toward Transparency in Nephrology Research.

Authors:  Anna Francis; Andrew Mallett
Journal:  Kidney Int Rep       Date:  2019-12-04

Review 3.  Genetic studies of focal segmental glomerulosclerosis: a waste of scientific time?

Authors:  Alexander J Howie
Journal:  Pediatr Nephrol       Date:  2018-12-27       Impact factor: 3.714

4.  Genetic testing in the diagnosis of chronic kidney disease: recommendations for clinical practice.

Authors:  Nine Knoers; Corinne Antignac; Carsten Bergmann; Karin Dahan; Sabrina Giglio; Laurence Heidet; Beata S Lipska-Ziętkiewicz; Marina Noris; Giuseppe Remuzzi; Rosa Vargas-Poussou; Franz Schaefer
Journal:  Nephrol Dial Transplant       Date:  2022-01-25       Impact factor: 5.992

  4 in total

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