Literature DB >> 29152413

Confocal Vessel Structure Segmentation with Optimized Feature Bank and Random Forests.

Yasmin M Kassim1, V B Surya Prasath1, Olga V Glinskii2,3, Vladislav V Glinsky2,4, Virginia H Huxley3,5, Kannappan Palaniappan1.   

Abstract

In this paper, we consider confocal microscopy based vessel segmentation with optimized features and random forest classification. By utilizing multi-scale vessel-specific features tuned to capture curvilinear structures such as Frobenius norm of the Hessian eigenvalues, Laplacian of Gaussians (LoG), oriented second derivative, line detector and intensity masked with LoG scale map. we obtain better segmentation results in challenging imaging conditions. We obtain binary segmentations using random forest classifier trained on physiologists marked ground-truth. Experimental results on mice dura mater confocal microscopy vessel segmentations indicate that we obtain better results compared to global segmentation approaches.

Entities:  

Year:  2017        PMID: 29152413      PMCID: PMC5690568          DOI: 10.1109/AIPR.2016.8010580

Source DB:  PubMed          Journal:  IEEE Appl Imag Pattern Recognit Workshop        ISSN: 2164-2516


  3 in total

1.  MULTISCALE TENSOR ANISOTROPIC FILTERING OF FLUORESCENCE MICROSCOPY FOR DENOISING MICROVASCULATURE.

Authors:  V B S Prasath; R Pelapur; O V Glinskii; V V Glinsky; V H Huxley; K Palaniappan
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2015-04

2.  Multi-focus image fusion using epifluorescence microscopy for robust vascular segmentation.

Authors:  Rengarajan Pelapur; V B Surya Prasath; Filiz Bunyak; Olga V Glinskii; Vladislav V Glinsky; Virginia H Huxley; Kannappan Palaniappan
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

3.  Random Forests for Dura Mater Microvasculature Segmentation Using Epifluorescence Images.

Authors:  Yasmin M Kassim; V B Surya Prasath; Rengarajan Pelapur; Olga V Glinskii; Richard J Maude; Vladislav V Glinsky; Virginia H Huxley; Kannappan Palaniappan
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2016-08
  3 in total
  2 in total

1.  Patch-Based Semantic Segmentation for Detecting Arterioles and Venules in Epifluorescence Imagery.

Authors:  Yasmin M Kassim; Olga V Glinskii; Vladislav V Glinsky; Virginia H Huxley; Kannappan Palaniappan
Journal:  IEEE Appl Imag Pattern Recognit Workshop       Date:  2019-05-09

2.  Complex Non-sinus-associated Pachymeningeal Lymphatic Structures: Interrelationship With Blood Microvasculature.

Authors:  Olga V Glinskii; Virginia H Huxley; Leike Xie; Filiz Bunyak; Kannappan Palaniappan; Vladislav V Glinsky
Journal:  Front Physiol       Date:  2019-10-31       Impact factor: 4.566

  2 in total

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