| Literature DB >> 29152361 |
Le Tuan Anh1, Alexander A Titov2, Reza Samavati2, Leonid G Voskressensky2, Alexey V Varlamov2, Victor N Khrustalev3.
Abstract
The title compound, C19H19NO5, (I), is the product of a domino reaction between cotarnine chloride and acetyl-acetylene catalysed by copper(I) iodide. The mol-ecule of (I) comprises a fused tetra-cyclic system containing two terminal five-membered rings (pyrrole and 1,3-dioxole) and two central six-membered rings (di-hydro-pyridine and benzene). The five-membered 1,3-dioxole ring has an envelope conformation and the central six-membered di-hydro-pyridine ring adopts a twist-boat conformation. The acyl substituent is almost coplanar with the pyrrole ring, whereas the meth-oxy substituent is twisted by 27.93 (16)° relative to the benzene ring. The 2-oxopropan-1-yl substituent is roughly perpendicular to the pyrrole ring. In the crystal, mol-ecules are stacked along the a-axis direction; the stacks are linked by weak C-H⋯O hydrogen bonds into puckered layers lying parallel to (001).Entities:
Keywords: alkaloids; cotarnine; crystal structure; dihydropyrrolo[2,1-a]isoquinolines; domino reaction; lamellarin
Year: 2017 PMID: 29152361 PMCID: PMC5683501 DOI: 10.1107/S2056989017015110
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Molecular structure of (I). Displacement ellipsoids are drawn at the 50% probability level. H atoms are represented as small spheres of arbitrary radius.
Figure 2Crystal structure of (I) illustrating the hydrogen-bonded layers parallel to (001). Dashed lines indicate the intermolecular C—H⋯O hydrogen bonds.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3⋯O13i | 0.95 | 2.44 | 3.2840 (14) | 147 |
| C9—H9 | 0.99 | 2.46 | 3.2207 (15) | 133 |
Symmetry codes: (i) ; (ii) .
Figure 3Synthesis of (I) using a domino reaction between cotarnine chloride and acetylacetylene catalysed by copper(I) iodide.
Experimental details
| Crystal data | |
| Chemical formula | C19H19NO5 |
|
| 341.35 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 120 |
|
| 7.2782 (4), 14.0016 (7), 15.7852 (8) |
| β (°) | 99.546 (1) |
|
| 1586.34 (14) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.10 |
| Crystal size (mm) | 0.20 × 0.15 × 0.15 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.970, 0.980 |
| No. of measured, independent and observed [ | 24316, 5762, 4535 |
|
| 0.042 |
| (sin θ/λ)max (Å−1) | 0.758 |
| Refinement | |
|
| 0.048, 0.133, 1.03 |
| No. of reflections | 5762 |
| No. of parameters | 229 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.46, −0.38 |
Computer programs: APEX2 (Bruker, 2005 ▸), SAINT (Bruker, 2001 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸) and SHELXTL (Sheldrick, 2008 ▸).
| C19H19NO5 | |
| Monoclinic, | Mo |
| Cell parameters from 5328 reflections | |
| θ = 2.6–31.9° | |
| µ = 0.10 mm−1 | |
| β = 99.546 (1)° | |
| Prism, orange | |
| 0.20 × 0.15 × 0.15 mm |
| Bruker APEXII CCD diffractometer | 4535 reflections with |
| Radiation source: fine-focus seales tube | |
| φ and ω scans | θmax = 32.6°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | |
| 24316 measured reflections | |
| 5762 independent reflections |
| Refinement on | Primary atom site location: difference Fourier map |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5762 reflections | (Δ/σ)max < 0.001 |
| 229 parameters | Δρmax = 0.46 e Å−3 |
| 0 restraints | Δρmin = −0.38 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.20836 (15) | 0.37136 (8) | 0.45572 (7) | 0.01256 (19) | |
| C2 | 0.24234 (15) | 0.46920 (8) | 0.48054 (7) | 0.0138 (2) | |
| C3 | 0.28874 (16) | 0.47143 (8) | 0.56943 (7) | 0.0147 (2) | |
| H3 | 0.3177 | 0.5269 | 0.6036 | 0.018* | |
| N4 | 0.28561 (14) | 0.38096 (7) | 0.59883 (6) | 0.01391 (18) | |
| C5 | 0.30680 (18) | 0.35126 (8) | 0.68855 (7) | 0.0174 (2) | |
| H5A | 0.2856 | 0.4062 | 0.7252 | 0.021* | |
| H5B | 0.4344 | 0.3268 | 0.7081 | 0.021* | |
| C6 | 0.16472 (17) | 0.27329 (8) | 0.69533 (7) | 0.0165 (2) | |
| H6A | 0.1820 | 0.2487 | 0.7549 | 0.020* | |
| H6B | 0.0373 | 0.2999 | 0.6812 | 0.020* | |
| C6A | 0.18777 (15) | 0.19242 (8) | 0.63407 (7) | 0.01320 (19) | |
| C7 | 0.17044 (16) | 0.09736 (8) | 0.65958 (7) | 0.0150 (2) | |
| H7 | 0.1389 | 0.0818 | 0.7140 | 0.018* | |
| C7A | 0.20129 (16) | 0.02752 (8) | 0.60209 (7) | 0.0147 (2) | |
| O8 | 0.19904 (13) | −0.06993 (6) | 0.61417 (6) | 0.01939 (18) | |
| C9 | 0.22878 (17) | −0.11078 (8) | 0.53375 (8) | 0.0169 (2) | |
| H9A | 0.3207 | −0.1634 | 0.5441 | 0.020* | |
| H9B | 0.1105 | −0.1367 | 0.5020 | 0.020* | |
| O10 | 0.29712 (13) | −0.03606 (6) | 0.48500 (6) | 0.01822 (18) | |
| C10A | 0.25597 (15) | 0.04791 (8) | 0.52391 (7) | 0.0137 (2) | |
| C11 | 0.27333 (15) | 0.14145 (8) | 0.49713 (7) | 0.01233 (19) | |
| C11A | 0.23175 (15) | 0.21532 (8) | 0.55265 (7) | 0.01190 (19) | |
| C11B | 0.24022 (15) | 0.31718 (8) | 0.53044 (7) | 0.01223 (19) | |
| C12 | 0.13624 (15) | 0.34137 (8) | 0.36538 (7) | 0.0141 (2) | |
| H12A | 0.0251 | 0.3802 | 0.3431 | 0.017* | |
| H12B | 0.0963 | 0.2738 | 0.3656 | 0.017* | |
| C13 | 0.27738 (16) | 0.35160 (8) | 0.30483 (7) | 0.0145 (2) | |
| O13 | 0.44297 (12) | 0.36125 (7) | 0.33022 (6) | 0.02009 (19) | |
| C14 | 0.19984 (19) | 0.34580 (11) | 0.21036 (8) | 0.0235 (3) | |
| H14A | 0.2926 | 0.3697 | 0.1771 | 0.035* | |
| H14B | 0.0867 | 0.3848 | 0.1979 | 0.035* | |
| H14C | 0.1698 | 0.2792 | 0.1946 | 0.035* | |
| C15 | 0.23042 (17) | 0.55343 (8) | 0.42517 (8) | 0.0165 (2) | |
| O15 | 0.19111 (15) | 0.54807 (7) | 0.34639 (6) | 0.0253 (2) | |
| C16 | 0.26736 (18) | 0.64920 (8) | 0.46885 (8) | 0.0196 (2) | |
| H16A | 0.2745 | 0.6986 | 0.4255 | 0.029* | |
| H16B | 0.3855 | 0.6467 | 0.5089 | 0.029* | |
| H16C | 0.1660 | 0.6644 | 0.5005 | 0.029* | |
| O17 | 0.33691 (12) | 0.16770 (6) | 0.42396 (5) | 0.01608 (17) | |
| C17 | 0.31065 (19) | 0.10236 (9) | 0.35248 (8) | 0.0206 (2) | |
| H17A | 0.3391 | 0.1348 | 0.3012 | 0.031* | |
| H17B | 0.1811 | 0.0803 | 0.3418 | 0.031* | |
| H17C | 0.3939 | 0.0474 | 0.3658 | 0.031* |
| C1 | 0.0131 (4) | 0.0129 (4) | 0.0122 (4) | −0.0003 (4) | 0.0034 (4) | −0.0007 (4) |
| C2 | 0.0154 (5) | 0.0121 (5) | 0.0143 (5) | 0.0005 (4) | 0.0036 (4) | 0.0009 (4) |
| C3 | 0.0185 (5) | 0.0114 (4) | 0.0146 (5) | −0.0013 (4) | 0.0035 (4) | −0.0010 (4) |
| N4 | 0.0184 (4) | 0.0119 (4) | 0.0113 (4) | −0.0009 (3) | 0.0020 (3) | −0.0008 (3) |
| C5 | 0.0259 (6) | 0.0148 (5) | 0.0108 (4) | −0.0005 (4) | 0.0007 (4) | −0.0013 (4) |
| C6 | 0.0242 (6) | 0.0138 (5) | 0.0126 (5) | 0.0014 (4) | 0.0064 (4) | −0.0008 (4) |
| C6A | 0.0148 (5) | 0.0129 (4) | 0.0124 (4) | 0.0006 (4) | 0.0034 (4) | −0.0003 (4) |
| C7 | 0.0188 (5) | 0.0133 (5) | 0.0135 (5) | 0.0010 (4) | 0.0046 (4) | 0.0016 (4) |
| C7A | 0.0156 (5) | 0.0117 (4) | 0.0167 (5) | 0.0002 (4) | 0.0027 (4) | 0.0013 (4) |
| O8 | 0.0291 (5) | 0.0110 (4) | 0.0192 (4) | 0.0002 (3) | 0.0077 (3) | 0.0005 (3) |
| C9 | 0.0178 (5) | 0.0121 (5) | 0.0210 (5) | −0.0008 (4) | 0.0039 (4) | −0.0017 (4) |
| O10 | 0.0249 (4) | 0.0111 (4) | 0.0204 (4) | −0.0003 (3) | 0.0088 (3) | −0.0032 (3) |
| C10A | 0.0146 (5) | 0.0117 (4) | 0.0152 (5) | −0.0001 (4) | 0.0038 (4) | −0.0024 (4) |
| C11 | 0.0125 (4) | 0.0135 (5) | 0.0117 (4) | −0.0007 (4) | 0.0040 (3) | −0.0010 (4) |
| C11A | 0.0128 (4) | 0.0115 (4) | 0.0115 (4) | −0.0005 (3) | 0.0020 (3) | −0.0009 (3) |
| C11B | 0.0129 (4) | 0.0122 (4) | 0.0119 (4) | −0.0007 (3) | 0.0031 (4) | −0.0012 (3) |
| C12 | 0.0140 (5) | 0.0155 (5) | 0.0124 (4) | −0.0014 (4) | 0.0015 (4) | −0.0002 (4) |
| C13 | 0.0189 (5) | 0.0121 (4) | 0.0128 (4) | −0.0014 (4) | 0.0040 (4) | −0.0004 (4) |
| O13 | 0.0177 (4) | 0.0258 (5) | 0.0173 (4) | −0.0038 (3) | 0.0045 (3) | −0.0033 (3) |
| C14 | 0.0257 (6) | 0.0330 (7) | 0.0120 (5) | −0.0056 (5) | 0.0035 (4) | −0.0004 (5) |
| C15 | 0.0181 (5) | 0.0145 (5) | 0.0174 (5) | 0.0015 (4) | 0.0046 (4) | 0.0021 (4) |
| O15 | 0.0392 (6) | 0.0209 (4) | 0.0156 (4) | 0.0024 (4) | 0.0038 (4) | 0.0038 (3) |
| C16 | 0.0235 (6) | 0.0131 (5) | 0.0224 (6) | 0.0001 (4) | 0.0041 (5) | 0.0021 (4) |
| O17 | 0.0217 (4) | 0.0151 (4) | 0.0132 (4) | −0.0011 (3) | 0.0081 (3) | −0.0022 (3) |
| C17 | 0.0281 (6) | 0.0210 (6) | 0.0138 (5) | 0.0002 (5) | 0.0061 (4) | −0.0049 (4) |
| C1—C11B | 1.3890 (15) | C9—H9B | 0.9900 |
| C1—C2 | 1.4350 (15) | O10—C10A | 1.3820 (13) |
| C1—C12 | 1.4957 (15) | C10A—C11 | 1.3884 (15) |
| C2—C3 | 1.3880 (16) | C11—O17 | 1.3640 (13) |
| C2—C15 | 1.4620 (16) | C11—C11A | 1.4204 (15) |
| C3—N4 | 1.3505 (14) | C11A—C11B | 1.4723 (15) |
| C3—H3 | 0.9500 | C12—C13 | 1.5215 (16) |
| N4—C11B | 1.3977 (14) | C12—H12A | 0.9900 |
| N4—C5 | 1.4595 (14) | C12—H12B | 0.9900 |
| C5—C6 | 1.5197 (17) | C13—O13 | 1.2129 (14) |
| C5—H5A | 0.9900 | C13—C14 | 1.5066 (16) |
| C5—H5B | 0.9900 | C14—H14A | 0.9800 |
| C6—C6A | 1.5162 (15) | C14—H14B | 0.9800 |
| C6—H6A | 0.9900 | C14—H14C | 0.9800 |
| C6—H6B | 0.9900 | C15—O15 | 1.2312 (15) |
| C6A—C7 | 1.4022 (16) | C15—C16 | 1.5114 (17) |
| C6A—C11A | 1.4119 (15) | C16—H16A | 0.9800 |
| C7—C7A | 1.3777 (16) | C16—H16B | 0.9800 |
| C7—H7 | 0.9500 | C16—H16C | 0.9800 |
| C7A—O8 | 1.3783 (14) | O17—C17 | 1.4406 (14) |
| C7A—C10A | 1.3877 (16) | C17—H17A | 0.9800 |
| O8—C9 | 1.4411 (14) | C17—H17B | 0.9800 |
| C9—O10 | 1.4355 (15) | C17—H17C | 0.9800 |
| C9—H9A | 0.9900 | ||
| C11B—C1—C2 | 107.01 (9) | O10—C10A—C11 | 129.04 (10) |
| C11B—C1—C12 | 129.72 (10) | C7A—C10A—C11 | 121.25 (10) |
| C2—C1—C12 | 123.07 (10) | O17—C11—C10A | 124.94 (10) |
| C3—C2—C1 | 107.43 (10) | O17—C11—C11A | 117.59 (9) |
| C3—C2—C15 | 124.52 (10) | C10A—C11—C11A | 117.37 (10) |
| C1—C2—C15 | 128.05 (10) | C6A—C11A—C11 | 119.99 (10) |
| N4—C3—C2 | 108.12 (10) | C6A—C11A—C11B | 117.49 (9) |
| N4—C3—H3 | 125.9 | C11—C11A—C11B | 122.47 (10) |
| C2—C3—H3 | 125.9 | C1—C11B—N4 | 106.96 (9) |
| C3—N4—C11B | 110.44 (9) | C1—C11B—C11A | 136.34 (10) |
| C3—N4—C5 | 126.55 (9) | N4—C11B—C11A | 116.67 (9) |
| C11B—N4—C5 | 122.74 (9) | C1—C12—C13 | 113.94 (9) |
| N4—C5—C6 | 108.02 (9) | C1—C12—H12A | 108.8 |
| N4—C5—H5A | 110.1 | C13—C12—H12A | 108.8 |
| C6—C5—H5A | 110.1 | C1—C12—H12B | 108.8 |
| N4—C5—H5B | 110.1 | C13—C12—H12B | 108.8 |
| C6—C5—H5B | 110.1 | H12A—C12—H12B | 107.7 |
| H5A—C5—H5B | 108.4 | O13—C13—C14 | 121.44 (11) |
| C6A—C6—C5 | 110.06 (9) | O13—C13—C12 | 122.70 (10) |
| C6A—C6—H6A | 109.6 | C14—C13—C12 | 115.83 (10) |
| C5—C6—H6A | 109.6 | C13—C14—H14A | 109.5 |
| C6A—C6—H6B | 109.6 | C13—C14—H14B | 109.5 |
| C5—C6—H6B | 109.6 | H14A—C14—H14B | 109.5 |
| H6A—C6—H6B | 108.2 | C13—C14—H14C | 109.5 |
| C7—C6A—C11A | 121.45 (10) | H14A—C14—H14C | 109.5 |
| C7—C6A—C6 | 120.06 (10) | H14B—C14—H14C | 109.5 |
| C11A—C6A—C6 | 118.46 (10) | O15—C15—C2 | 122.38 (11) |
| C7A—C7—C6A | 116.89 (10) | O15—C15—C16 | 120.58 (11) |
| C7A—C7—H7 | 121.6 | C2—C15—C16 | 117.03 (10) |
| C6A—C7—H7 | 121.6 | C15—C16—H16A | 109.5 |
| C7—C7A—O8 | 127.20 (10) | C15—C16—H16B | 109.5 |
| C7—C7A—C10A | 122.82 (10) | H16A—C16—H16B | 109.5 |
| O8—C7A—C10A | 109.78 (10) | C15—C16—H16C | 109.5 |
| C7A—O8—C9 | 105.31 (9) | H16A—C16—H16C | 109.5 |
| O10—C9—O8 | 107.40 (9) | H16B—C16—H16C | 109.5 |
| O10—C9—H9A | 110.2 | C11—O17—C17 | 118.20 (9) |
| O8—C9—H9A | 110.2 | O17—C17—H17A | 109.5 |
| O10—C9—H9B | 110.2 | O17—C17—H17B | 109.5 |
| O8—C9—H9B | 110.2 | H17A—C17—H17B | 109.5 |
| H9A—C9—H9B | 108.5 | O17—C17—H17C | 109.5 |
| C10A—O10—C9 | 105.18 (9) | H17A—C17—H17C | 109.5 |
| O10—C10A—C7A | 109.60 (10) | H17B—C17—H17C | 109.5 |
| C11B—C1—C2—C3 | −1.55 (13) | C7—C6A—C11A—C11 | −4.76 (17) |
| C12—C1—C2—C3 | 173.73 (10) | C6—C6A—C11A—C11 | 173.48 (10) |
| C11B—C1—C2—C15 | 179.00 (11) | C7—C6A—C11A—C11B | 177.82 (10) |
| C12—C1—C2—C15 | −5.72 (18) | C6—C6A—C11A—C11B | −3.93 (15) |
| C1—C2—C3—N4 | 0.40 (13) | O17—C11—C11A—C6A | −172.16 (10) |
| C15—C2—C3—N4 | 179.88 (11) | C10A—C11—C11A—C6A | 4.35 (16) |
| C2—C3—N4—C11B | 0.91 (13) | O17—C11—C11A—C11B | 5.12 (16) |
| C2—C3—N4—C5 | −173.22 (11) | C10A—C11—C11A—C11B | −178.37 (10) |
| C3—N4—C5—C6 | 137.61 (11) | C2—C1—C11B—N4 | 2.06 (12) |
| C11B—N4—C5—C6 | −35.84 (14) | C12—C1—C11B—N4 | −172.80 (11) |
| N4—C5—C6—C6A | 55.40 (12) | C2—C1—C11B—C11A | 179.75 (12) |
| C5—C6—C6A—C7 | 140.24 (11) | C12—C1—C11B—C11A | 4.9 (2) |
| C5—C6—C6A—C11A | −38.03 (14) | C3—N4—C11B—C1 | −1.89 (13) |
| C11A—C6A—C7—C7A | 1.02 (17) | C5—N4—C11B—C1 | 172.50 (10) |
| C6—C6A—C7—C7A | −177.19 (10) | C3—N4—C11B—C11A | 179.90 (10) |
| C6A—C7—C7A—O8 | 177.40 (11) | C5—N4—C11B—C11A | −5.71 (16) |
| C6A—C7—C7A—C10A | 3.08 (17) | C6A—C11A—C11B—C1 | −150.28 (13) |
| C7—C7A—O8—C9 | 176.86 (12) | C11—C11A—C11B—C1 | 32.37 (19) |
| C10A—C7A—O8—C9 | −8.22 (13) | C6A—C11A—C11B—N4 | 27.24 (15) |
| C7A—O8—C9—O10 | 15.32 (12) | C11—C11A—C11B—N4 | −150.10 (10) |
| O8—C9—O10—C10A | −16.59 (12) | C11B—C1—C12—C13 | −114.40 (13) |
| C9—O10—C10A—C7A | 11.69 (12) | C2—C1—C12—C13 | 71.46 (14) |
| C9—O10—C10A—C11 | −172.25 (11) | C1—C12—C13—O13 | 16.37 (16) |
| C7—C7A—C10A—O10 | 172.97 (11) | C1—C12—C13—C14 | −165.56 (10) |
| O8—C7A—C10A—O10 | −2.22 (13) | C3—C2—C15—O15 | 179.01 (12) |
| C7—C7A—C10A—C11 | −3.45 (18) | C1—C2—C15—O15 | −1.6 (2) |
| O8—C7A—C10A—C11 | −178.64 (10) | C3—C2—C15—C16 | −1.43 (17) |
| O10—C10A—C11—O17 | 0.16 (19) | C1—C2—C15—C16 | 177.94 (11) |
| C7A—C10A—C11—O17 | 175.81 (11) | C10A—C11—O17—C17 | 27.93 (16) |
| O10—C10A—C11—C11A | −176.06 (11) | C11A—C11—O17—C17 | −155.86 (10) |
| C7A—C10A—C11—C11A | −0.40 (16) |
| H··· | ||||
| C3—H3···O13i | 0.95 | 2.44 | 3.2840 (14) | 147 |
| C9—H9 | 0.99 | 2.46 | 3.2207 (15) | 133 |