Literature DB >> 29147824

An integrated QSAR modeling approach to explore the structure-property and selectivity relationships of N-benzoyl-L-biphenylalanines as integrin antagonists.

Sk Abdul Amin1, Nilanjan Adhikari1, Sonam Bhargava2, Shovanlal Gayen3, Tarun Jha4.   

Abstract

Integrins [Formula: see text] and [Formula: see text] are important targets to treat different inflammatory diseases, such as multiple sclerosis, inflammatory bowel diseases, rheumatoid arthritis, atherosclerosis, and asthma. Despite being valuable targets, only a few work has been reported to date regarding molecular modeling studies on these integrins. Not only that, none of these reports addressed the selectivity issue between integrins [Formula: see text] and [Formula: see text]. Therefore, a major challenge regarding the design and discovery of selective integrin antagonists remains. In this study, a series of 142 N-benzoyl-L-biphenylalanines having both integrin [Formula: see text] and [Formula: see text] inhibitory activities were considered for a variety of QSAR approaches including regression and classification-based 2D-QSARs, Hologram QSARs, 3D-QSAR CoMFA and CoMSIA studies to identify the structural requirements of these integrin antagonists. All these QSAR models were statistically validated and subsequently correlated with each other to get a detailed understanding of the activity and selectivity profiles of these molecules.

Entities:  

Keywords:  3D-QSAR; Integrin; N-benzoyl-L-biphenylalanine; QAAR; QSAAR; Selectivity

Mesh:

Substances:

Year:  2017        PMID: 29147824     DOI: 10.1007/s11030-017-9789-9

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  37 in total

1.  3D QSAR (COMFA) of a series of potent and highly selective VLA-4 antagonists.

Authors:  Juswinder Singh; Herman van Vlijmen; Wen-Chemg Lee; Yusheng Liao; Ko-Chung Lin; Humayun Ateeq; Julio Cuervo; Craig Zimmerman; Charles Hammond; Michael Karpusas; Rex Palmer; Tapan Chattopadhyay; Steven P Adams
Journal:  J Comput Aided Mol Des       Date:  2002-03       Impact factor: 3.686

2.  Insights into phenylalanine derivatives recognition of VLA-4 integrin: from a pharmacophoric study to 3D-QSAR and molecular docking analyses.

Authors:  Antonio Macchiarulo; Gabriele Costantino; Mirco Meniconi; Karin Pleban; Gerhard Ecker; Daniele Bellocchi; Roberto Pellicciari
Journal:  J Chem Inf Comput Sci       Date:  2004 Sep-Oct

3.  Improved naïve Bayesian modeling of numerical data for absorption, distribution, metabolism and excretion (ADME) property prediction.

Authors:  Anthony E Klon; Jeffrey F Lowrie; David J Diller
Journal:  J Chem Inf Model       Date:  2006 Sep-Oct       Impact factor: 4.956

4.  Discovery of potential integrin VLA-4 antagonists using pharmacophore modeling, virtual screening and molecular docking studies.

Authors:  Sundarapandian Thangapandian; Shalini John; Sugunadevi Sakkiah; Keun Woo Lee
Journal:  Chem Biol Drug Des       Date:  2011-06-20       Impact factor: 2.817

5.  First molecular modeling report on novel arylpyrimidine kynurenine monooxygenase inhibitors through multi-QSAR analysis against Huntington's disease: A proposal to chemists!

Authors:  Sk Abdul Amin; Nilanjan Adhikari; Tarun Jha; Shovanlal Gayen
Journal:  Bioorg Med Chem Lett       Date:  2016-11-01       Impact factor: 2.823

6.  Quantitative structure-activity-activity and quantitative structure-activity investigations of human and rodent toxicity.

Authors:  Iglika Lessigiarska; Andrew P Worth; Tatiana I Netzeva; John C Dearden; Mark T D Cronin
Journal:  Chemosphere       Date:  2006-05-22       Impact factor: 7.086

7.  Synthesis and SAR of N-benzoyl-L-biphenylalanine derivatives: discovery of TR-14035, a dual alpha(4)beta(7)/alpha(4)beta(1) integrin antagonist.

Authors:  Ila Sircar; Kristjan S Gudmundsson; Richard Martin; Jimmy Liang; Sumihiro Nomura; Honnappa Jayakumar; Bradley R Teegarden; Dawn M Nowlin; Pina M Cardarelli; Jason R Mah; Samuel Connell; Ronald C Griffith; Elias Lazarides
Journal:  Bioorg Med Chem       Date:  2002-06       Impact factor: 3.641

Review 8.  Integrin structure, activation, and interactions.

Authors:  Iain D Campbell; Martin J Humphries
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-03-01       Impact factor: 10.005

9.  Insight into the Structural Requirements of Theophylline-Based Aldehyde Dehydrogenase lAl (ALDHlAl) Inhibitors Through Multi-QSAR Modeling and Molecular Docking Approaches.

Authors:  Sk Abdul Amin; Nilanjan Adhikari; Shovanlal Gayen; Tarun Jha
Journal:  Curr Drug Discov Technol       Date:  2016

10.  Electron microscopy and structural model of human fibronectin receptor.

Authors:  M V Nermut; N M Green; P Eason; S S Yamada; K M Yamada
Journal:  EMBO J       Date:  1988-12-20       Impact factor: 11.598

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  2 in total

1.  A critical analysis of urea transporter B inhibitors: molecular fingerprints, pharmacophore features for the development of next-generation diuretics.

Authors:  Sk Abdul Amin; Sudipta Nandi; Sushil Kumar Kashaw; Tarun Jha; Shovanlal Gayen
Journal:  Mol Divers       Date:  2022-01-03       Impact factor: 3.364

2.  Intercorrelation Limits in Molecular Descriptor Preselection for QSAR/QSPR.

Authors:  Anita Rácz; Dávid Bajusz; Károly Héberger
Journal:  Mol Inform       Date:  2019-04-04       Impact factor: 3.353

  2 in total

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